Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1966 ATGAACAACCCCGCACCGCCGGGAAATATGGCCTCCGGATCTCCGCCGTGGCTGAACAGCGGCGACAACGCGTGGCAAATAACCGCCTCCACTCTCGTCGGACTTCAGAGCATGCCGGGCCTGGTGATTCTCTACGCCAGCATCGTCAAGAAGAAATGGGCCGTCAATTCTGCATTTATGGCCCTTTACGCCTTCGCCGCCGTCCTAATCTGCTGGGTTCTCTTCGGCTATCGCATGGCCTTCGGCGAGCAGCTCCTTCCCTTGTGGGGCAGAGGCATTCCTGCTCTCGGCCAAAGTTACCTAATCGGCCAAGCCAATATACCCGAGAGCATCCACCGCCGCCGCGACGGCACGGTGGTGACGCCCAGAATTGAACCCAGCGTTCCCATGGCCTCGCTCGTCTACTTCCAATTCACTTTCGCTGCGATTACTGTGATTTTACTTGCTGGCTCTGTTCTTGCTCGAATGAATATCAAGGCCTGGATGGCCTTTGTTCCTCTTTGGGTCATTTTCTCATACACCGTCGGCGCATACACTATATGGGGCGGAGGGTTTCTCTTCCACTGGGGCGTCATCGATTACTCCGGCGGCTACGTCATCCATCTTTCTTCGGGAATCTCCGGCTTAACCGCTGCTTACTGGGTTGGTCCGAGAATTAAGAGTGATAGAGAGAGATTTCCGCCCAATAACGTGCTGCTGATGCTCGCCGGAGCGGGGCTGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCGCCCCACGCCGCCAACGTGGTGGCCTCGATTGCGGTGCTGAACACGAACGTCAGCGCGGCGACCAGCCTGCTCGTGTGGACCACTTTGGATGTCATTTTCTTCGGGAAGCCATCGGTGATCGGAGCCGTTCAGGGTATGATGACCGGCTTGGCTTGCGTTACGCCCGGCGCAGGAGTTGTGCAAACGTGGGCGGCTATCATAATGGGGATTCTAGCAGGAATCATTCCGTGGGTGTCCATGATGGTCCTCCACAAAAAATTGAGTTTCCTTCAGAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTGGCGGGAATGTTGGGCGGGCTTTTAACTGGGCTTTTGGCGGAGCCCGATCTATGCGATCTGTATCTACCGGTCCCCGACACGCGCGGTGCCTTCTACGGCGGAACCGGCGGCATTCAGTTTCTTAAACAACTGGCCGGAGCCATGTTTATAATAGGATGGAACGTTGTGTCGACGACGATTATACTCCTCTTTATTCGGCTGTTCGTGCCGTTGAGGATGCCGGACGAGGACCTCATGATCGGAGACGACGCCGTGCACGGCGAGGAGGCTTACGCTCTTTGGGGCGACGGCGAGAAGTTCGATCCGAGAAGGCACGGCAATGCGACGGCGAGCACGGAAGAGAGAGCGGCGTCGCCTTATATCAACGGTGCCAGAGGAGTGACCATCAATTTGTAA 1467 56.99 MNNPAPPGNMASGSPPWLNSGDNAWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLFGYRMAFGEQLLPLWGRGIPALGQSYLIGQANIPESIHRRRDGTVVTPRIEPSVPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTIWGGGFLFHWGVIDYSGGYVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHAANVVASIAVLNTNVSAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLACVTPGAGVVQTWAAIIMGILAGIIPWVSMMVLHKKLSFLQKADDTLGVFHTHAVAGMLGGLLTGLLAEPDLCDLYLPVPDTRGAFYGGTGGIQFLKQLAGAMFIIGWNVVSTTIILLFIRLFVPLRMPDEDLMIGDDAVHGEEAYALWGDGEKFDPRRHGNATASTEERAASPYINGARGVTINL 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19502089 19505423 - MC05g1574 Mch5g1966 689385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1966 488 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886(InterPro)
Mch5g1966 488 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886(InterPro)
Mch5g1966 488 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005886(InterPro)
Mch5g1966 488 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005886(InterPro)
Mch5g1966 488 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886(InterPro)
Mch5g1966 488 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch5g1966 488 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch5g1966 488 SUPERFAMILY Ammonium transporter 17 430 - -
Mch5g1966 488 NCBIfam ammonium transporter 22 448 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch5g1966 488 FunFam Ammonium transporter 8 451 - -
Mch5g1966 488 Gene3D Ammonium transporter AmtB like domains 6 451 IPR029020 -
Mch5g1966 488 PANTHER AMMONIUM TRANSPORTER MEP2 16 459 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1966 Mch-Chr5:19502089 Mch8g0424 Mch-Chr8:3030971 1.55E-191 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1966 K03320 - csv:101207321 850.892