Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1968 GAAGTTTCCTCTTTCAGCACAACTTTTGTGTTTGCAATAGTTCCATCAAGCTCCGGTGCACCAGTTGGGCATGGCCTCGCCTTTGTTATGGCTCCATCGACCCAATTTCCAGGTGCTCAAAGTGAACATTACTTGGGATTGTTCAACACCTCCAACAATGGCGACCCTTCGAATCATATTCTCGTGGTCGAATTCGATACGGTTAATGGGCACGACGACCCTAAAAATTCGGATGGAAACCATGTCGGAATCAACAAGAATGGTGTGCGCTCAAATGCATCAGAATCGGCTGAATATTCCAACTCTGGCTCTGATGTGAAGCCTGAGGTGAATATGGGTAGTGGTGATCCAATCCGAGCTTGGATTGAATATGATCGTCTTAGAAAGCGTATGAATGTTACAATAGCTCCCGCAAATGTGAAGAAACCAAATGAGACATTGTTTTCACATCCCATAAACTTGACTGGAGTTGTAAAAGAGAGAATGTTTGTTGGCTTCTCTGCGTCAACGGGCCAAGAAACAAGCTTCCACTACATTTTAGGATGGAGTTTTGCAGTTAATGAACCAGCACCTGAGTTAAATGTTTCTCAACTTTCGGTACCACCGATAGTTAACAGTTCACCGTCGTCGACATTCAATCCTCTAGTCACTGTTCTATTTAGTTATTCAGATCTCTATAAAGCAACAAGAGGATTTAGAGACTCAGAGTTAGTTGGATCAGGAGGCTTTGGCTCAGTATACAGAGGCGTCTTACTTTCCACCGGAAGTGAAGTTGCTGTAAAGAAAATAACAAGAAATTCGAGTCAGGGAATGCGGGAGTTCGCTGCCGAGATCGAAAGCTTGGGACGACTAAGACATAAGAACTTGGTAAATCTCCAAGGATGGTGCAAGAAACAGAATGACCTCCTCTTGGTTTATGACTATGTTCCAAATGGGAGCTTGGATTCTCTCCTTTACCATCCAAAGGACAACTCTGTACTGAATTGGGAACAAAGAATCAACATCGTCGAGGGTATTGCTGCTGGACTGTTGTATCTACACGAAGAATGGGAGCGCGTAGTTATTCATCGAGATGTTAAGCCAAGCAATGTCTTGATAGATATTGACATGCATGCTCGACTAAGCGACTTCGGTCTCGCTAGGCTATACGACCATGACCAAATTTCGCATACAACTAGTGTCGTCGGCACGATTGGCTACATCTCCCCCGAGTTGGCTCGCATGGGAAAAGCATCTAAAACTACAGATGTGTTTGCCTATGGAGTCTTACTCCTTGAGGTGGCCTGTGGAAGAAGACCTCTAGAGTCAGATCTGTTCATATTGGTGGATTGGGTAATGGAATGCCATGAAAGAGGTCAAATTCTTGAAGCAGCTGATCCAAAGTTGAATTCAGTTTATGATGTGGTTGAAATGGAGATGGTGTTGCAGCTTGGGCTACTTTGTTCCCATCATAGCCCTGAAGCTAGGCCAAGCATGAGGCAAGTCACAAGATATCTTAATGGAGAAGACCAAATTCTTTCCATTGATCCTTCAACTTACTCTCAAGTTACCTTCCAATCTAACTCAGGATTCACTCAATTTATCCCACCTTCTTTGCAATCTTCATCCACTAGTTTCATCTCTTCAACTTCAATAGATGTAGCACGTTTAGCTCTTCTTTCTGTGTTCCTCTCTTTGGCTGCTCATTCGGCGCAGTCTTCATTTCCCTACCATGGATTCAACGACACAAGCTTTGATCTTGATGGTGGAGCAACCGTTGTGAAACCATCTGGTGCGTTGAGGCTCACCAACAGATCACAAAAAATCATCGGCCACGCATTCTATCCAATTCCGTTCCGGATGTTTGATGAAAGTTCCAACTCATTTCGGAATGCTTCGTCTTTCAACACAAGTTTTGTGTTTGCAATCGATCCATCGAGTCCCGGCCAAGGGGGCTACGGCTTGGCCTTCACCTTAGCTCCATCAACCCAATTTGCAGGTGCTGAGAGTGGGCACTTCCTTGGATTATTCAACCATTCCAACAATGGAAGCTCTTCCAACCATATATTTGCTGTTGAATTTGACACTGTTAATGGGCAAGATGAAGGAGAGAACAGCAAAGGAAACCATGTTGGGATCAACATCAATAGCATTTCATCTGTTGCTTCCAAACCTGCTGGTTATTCCAACTATGGCAATCCTAATAACGGCGACTTTCAAATCGATTCTGGCAATCCGATTGTCGTTTGGATTGAATATGATGGCCCCAGAAGAACTGTGAACGTCACTATAGCTCCAATGACCAAGCAAAACCAAAAACCAACAGAGCCACTCCTTTCGCATCAGATTGACCTGACTCCTTTTCTAAAGGAACAAATGTTTGCTGGCTTCTCGGCATCGACTGGAGATAAAACAAGCTCTCATTACATTTTGGGATGGAGCTTTGCAGTGAACGGATCGGCGCCGCCCCTGAATCACTCTCTTCTTCCCAACCCACCAAAAGAGCAAGATCCTCCTCCTTCACGCAATTCCCACTTAAAGGTACTTTTTGCAGCTTTATCTGTGGTGGCCATTATAGGAGTGCTTTTCTTAGCTTTCTGGTTCAGAAGAATGTGGCAAACTGAGAGCCTTGAGGATTGGGAAAGAGATTGTCCTCACAGATTCAACTACAGAGATCTTTACACAGCAACAAAGGGATTTAAAGACAGCGAGCTAATTGGAATTGGGGGGTTCGGCTCAGTATACAAGGGCCACTTACGTTCAACTGGAATTGAGATTGCTGTGAAGAGAGTAAGAAGAAACTCAAAACAAGGAATGAAGGAATTCGCAGCAGAAATCGAAAGCTTAGGACGATTAAGACACAAAAACTTGGTTAATCTTCAAGGATGGTGCAAGAAACAGAACGATCTACTCATAGTTTACGATTATATTCCAAATGGATGTCTCTATTCGCTTCTATATCATCCAAAAAACAACTACATATTGAATTGGAAAGAAAGATTCAACATCCTTAAAGGAATTGCCGCAGGATTATTGTACCTTCACGAAGAGTGGGAGCAAGTGGTGATCCACCGAGATGTAAAGCCAAGCAATGTTCTAATCGACGGCGACATGAATGCACGATTGAGCGATTTTGGCCTGGCCAGGCAATACGACCACAACGAAGTATCGCACACGACCGGCGTCGTCGGCACCATCGGCTACATAGCGCCGGAGTTGGTTCGCACAGGGAAGGCATCGAAGAGCACCGATGTGTTCGGCTATGGAATTATGCTTCTGGAAGTGGCGTGTGGGAGAAAGCCTCTGGAACCGGAGCAGTTCATATTGGTCGATTGGGTGATGGAATGCTACGAAACTGGAGGAATTCTTTACGCTGCTGATCCGAAGCTGAATTCAGTGTATGAGATTGAGGAGATGGAGATGGTGCTGAAATTAGGGCTTCTGTGCACTCACCAGAGACCAGAAGCTCGGCCGACGATGAGACGGGTCACGAGATTTCTTCACGGCGAC 3489 44.8 EVSSFSTTFVFAIVPSSSGAPVGHGLAFVMAPSTQFPGAQSEHYLGLFNTSNNGDPSNHILVVEFDTVNGHDDPKNSDGNHVGINKNGVRSNASESAEYSNSGSDVKPEVNMGSGDPIRAWIEYDRLRKRMNVTIAPANVKKPNETLFSHPINLTGVVKERMFVGFSASTGQETSFHYILGWSFAVNEPAPELNVSQLSVPPIVNSSPSSTFNPLVTVLFSYSDLYKATRGFRDSELVGSGGFGSVYRGVLLSTGSEVAVKKITRNSSQGMREFAAEIESLGRLRHKNLVNLQGWCKKQNDLLLVYDYVPNGSLDSLLYHPKDNSVLNWEQRINIVEGIAAGLLYLHEEWERVVIHRDVKPSNVLIDIDMHARLSDFGLARLYDHDQISHTTSVVGTIGYISPELARMGKASKTTDVFAYGVLLLEVACGRRPLESDLFILVDWVMECHERGQILEAADPKLNSVYDVVEMEMVLQLGLLCSHHSPEARPSMRQVTRYLNGEDQILSIDPSTYSQVTFQSNSGFTQFIPPSLQSSSTSFISSTSIDVARLALLSVFLSLAAHSAQSSFPYHGFNDTSFDLDGGATVVKPSGALRLTNRSQKIIGHAFYPIPFRMFDESSNSFRNASSFNTSFVFAIDPSSPGQGGYGLAFTLAPSTQFAGAESGHFLGLFNHSNNGSSSNHIFAVEFDTVNGQDEGENSKGNHVGININSISSVASKPAGYSNYGNPNNGDFQIDSGNPIVVWIEYDGPRRTVNVTIAPMTKQNQKPTEPLLSHQIDLTPFLKEQMFAGFSASTGDKTSSHYILGWSFAVNGSAPPLNHSLLPNPPKEQDPPPSRNSHLKVLFAALSVVAIIGVLFLAFWFRRMWQTESLEDWERDCPHRFNYRDLYTATKGFKDSELIGIGGFGSVYKGHLRSTGIEIAVKRVRRNSKQGMKEFAAEIESLGRLRHKNLVNLQGWCKKQNDLLIVYDYIPNGCLYSLLYHPKNNYILNWKERFNILKGIAAGLLYLHEEWEQVVIHRDVKPSNVLIDGDMNARLSDFGLARQYDHNEVSHTTGVVGTIGYIAPELVRTGKASKSTDVFGYGIMLLEVACGRKPLEPEQFILVDWVMECYETGGILYAADPKLNSVYEIEEMEMVLKLGLLCTHQRPEARPTMRRVTRFLHGD 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19508354 19515462 - MC05g1575 Mch5g1968 689387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1968 1163 CDD STKc_IRAK 899 1160 - -
Mch5g1968 1163 ProSiteProfiles Protein kinase domain profile. 893 1163 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1968 1163 Gene3D Transferase(Phosphotransferase) domain 1 309 512 - -
Mch5g1968 1163 Gene3D Transferase(Phosphotransferase) domain 1 970 1162 - -
Mch5g1968 1163 SUPERFAMILY Concanavalin A-like lectins/glucanases 567 827 IPR013320 -
Mch5g1968 1163 MobiDBLite consensus disorder prediction 80 108 - -
Mch5g1968 1163 SUPERFAMILY Protein kinase-like (PK-like) 877 1160 IPR011009 -
Mch5g1968 1163 FunFam L-type lectin-domain containing receptor kinase S.4 309 512 - -
Mch5g1968 1163 MobiDBLite consensus disorder prediction 71 111 - -
Mch5g1968 1163 ProSitePatterns Protein kinases ATP-binding region signature. 238 262 IPR017441 GO:0005524(InterPro)
Mch5g1968 1163 CDD STKc_IRAK 238 501 - -
Mch5g1968 1163 Gene3D Phosphorylase Kinase; domain 1 218 308 - -
Mch5g1968 1163 Gene3D Phosphorylase Kinase; domain 1 878 969 - -
Mch5g1968 1163 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 203 IPR013320 -
Mch5g1968 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1968 1163 Pfam Protein kinase domain 233 496 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1968 1163 Pfam Protein kinase domain 894 1156 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1968 1163 SUPERFAMILY Protein kinase-like (PK-like) 217 535 IPR011009 -
Mch5g1968 1163 FunFam L-type lectin-domain containing receptor kinase V.9 564 816 - -
Mch5g1968 1163 Pfam Legume lectin domain 2 198 IPR001220 GO:0030246(InterPro)
Mch5g1968 1163 Pfam Legume lectin domain 566 821 IPR001220 GO:0030246(InterPro)
Mch5g1968 1163 ProSitePatterns Protein kinases ATP-binding region signature. 899 922 IPR017441 GO:0005524(InterPro)
Mch5g1968 1163 CDD lectin_legume_LecRK_Arcelin_ConA 2 187 IPR001220 GO:0030246(InterPro)
Mch5g1968 1163 FunFam serine/threonine-protein kinase PBS1-like 205 308 - -
Mch5g1968 1163 SMART serkin_6 893 1160 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1968 1163 SMART serkin_6 232 499 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1968 1163 CDD lectin_legume_LecRK_Arcelin_ConA 567 812 IPR001220 GO:0030246(InterPro)
Mch5g1968 1163 FunFam L-type lectin-domain containing receptor kinase S.4 970 1163 - -
Mch5g1968 1163 Gene3D - 564 818 - -
Mch5g1968 1163 Gene3D - 1 199 - -
Mch5g1968 1163 PANTHER - 571 1162 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Mch5g1968 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1015 1027 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1968 1163 FunFam serine/threonine-protein kinase PBS1-like 861 969 - -
Mch5g1968 1163 ProSiteProfiles Protein kinase domain profile. 232 506 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1806 Mch-Chr11:17670702 Mch5g1968 Mch-Chr5:19508354 4.83E-307 dispersed
Mch1g0697 Mch-Chr1:10972704 Mch5g1968 Mch-Chr5:19508354 3.78E-278 dispersed
Mch3g1617 Mch-Chr3:18020547 Mch5g1968 Mch-Chr5:19508354 9.16E-79 dispersed
Mch4g0866 Mch-Chr4:6207696 Mch5g1968 Mch-Chr5:19508354 3.00E-200 dispersed
Mch5g1454 Mch-Chr5:15618245 Mch5g1968 Mch-Chr5:19508354 4.30E-194 dispersed
Mch5g1861 Mch-Chr5:18770549 Mch5g1968 Mch-Chr5:19508354 1.39E-177 dispersed
Mch5g1968 Mch-Chr5:19508354 Mch6g0120 Mch-Chr6:691627 3.84E-133 dispersed
Mch8g2133 Mch-Chr8:24443809 Mch5g1968 Mch-Chr5:19508354 2.09E-24 dispersed
Mch5g1968 Mch-Chr5:19508354 Mch5g1860 Mch-Chr5:18765416 8.43E-184 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77442 PF00069 Pkinase 2.10E-50 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1968 - - - 0.0