Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1974 ATGGGAAAAACCCACCACTCCCTGAGTGAATTTCAGGCACGCCCACTTCAGTTGATGCAGCTTTTTGAACAGCAAACGGCTGTTTGGTGCTGCTCTAAATTACCCAGTAAGAACAGGAAATGGAAGAACCAACAATGGAGGAACTGTTCTTACTGGCTCATTGCTCTCATTTTTACTCATATCTTGGCCTTTTCTCTTCAACCAGTCTCCGGCCAGATGTGGGACGGAGTTGCTGTTACGCAAGGAGATTATCAAGCTCTTCAAGCTTTAAAGAGCCAACTTATCGATCTAAAAGGAGTTCTACGTAGCTGGAATGGCAGTAATGGAGCTTGTTCCGGGCGGTGGGTAGGAATCAAGTGTGTGAAGGGGCAGGTCATTGCCATACAGCTTCCATGGAAGGCCCTCGCCGGCCGGCTTTCCGAGGAGATAGGGCAGCTCCGGGAACTCAGGAAGCTCAGCCTCCACGATAACGTAATCTCCGGCGCCGTCCCTCCGTCTCTTGGGTACCTTCCAAATCTCAGAGGAGTTTACCTTTTCAACAACAAATTTTCAGGGTCTATTCCTCCTTCAATTGGTAACCTTCCTCTTCTTCAAACTCTTGATTTGAGCAACAATTTGCTCACCGGAGAAATCCCCTCTGCTCTTGCAAATTCTACCAAATTGATCAGGGTAAATTTGAGTTACAATTCATTGTCTGGATCTATTCCAAGTAGTTTTACGCAGTCGTTTTCTCTTATAATTCTGGCTCTCCAGCACAATAATATTTCTGGTACTGTCCCAGATTCTTGGGGTGGTTCTGGGAACAGAACTTGCCCACTTGGGGTTTTGACACTTGATCATAATATTATAACTGGACGGGTTCCAGCTTCTCTGGGAAAAATGGAATGGCTTCAAGAGATTTCCATTAGTGAAAACAGAATCTCTGGGGCTATACCAGGTGAAATAGGCAGGCTGAAAAGGCTTCGCCTTTTGGATTTATCCAACAACGCCATTAATGGCAGCTTCCCTTCAAGCTTCTTCAATCTCTCCTCTCTTGAATTATTGAATGTCGAGAATAATCGCCTTGATAGCCAGATTTCAGGAGATATTGACAGGTTACGGAATCTCTCAGTGGTGAGGCTTGGGAAAAATCGTTTTAGTGGCGAAATTCCTGCAAGTTTTGGGAACATTTCTGCTATCAGCCAACTTGATTTCTCGGAAAATAATTTGACAGGAGCAATTCCAGTTTCACTCGCCCGTTTGTTGAATCTGACGTCCTTCAATGTCTCTTACAACAATCTCTCTGGCCCTGTTCCCATTCTCCTGTCAAATAAGTTCAATGCGAGCTCTTTTGTAGGGAACCTCCAACTGTGTGGTTTTAGTACTTCATCCCCATGTCCACCAGCTCCCTCTCCACAGAATAATCTTACATCTCCATCAATAGATGTCATGAAACCGCATCGCCACCGCAGACTTAGTGTAAAGGACATAATTCTGATAGCAGCAGGAGCTCTGTTGGTGCTTCTTCTTCTTCTTTGTGCAATTTTGCTGTGTTGTCTGTTGACAAAAAGAGCTGCGAAGACAAATGGTAAAACAACACCCAAGCAAGCTGCTGCAAGGAGCATCGAAAAGGCAGCACCAGGCAGCACCGATGTCGCAACGGGCGAAGCTGGTGGAAAACTAGTCCATTTCGACGGGCCATTTGTTTTCACAGCTGATGATCTTCTGTGTGCAACTGCGGAGATCATGGGAAAGAGCACATATGGAACAGCATACAAAGCAACATTAGAAGATGGTAATGAAGTTGCAGTGAAAAGACTGAGGGAGAAGACAACAAAAGGGCAGAAGGAATTTGAAACCGAAGTTGCAGGACTCGGAAAAATTCGTCACTCGAATCTCCTTGCTCTTAGAGCCTACTACTTGGGCCCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCTAGAGGAAGCCTCTCTTCCTTCCTTCATGCTCGTGGACCGGAAACAACAGTCGATTGGCCGACAAGGATGAAGATAGCAATCGGAATTACGAGTGGGTTGGGCTACCTCCACACAGAGGAGAATCTAATCCATGGGAACCTCACATCCAGCAACATTCTGCTGGATGATCAAACTAATGCTCGAATTGCAGATTTTGGGCTTCCTAGGCTCATGACTTCAGCTGCAGCTACTAATGTGATTGCCACTGCAGGAACACAGGGCTATAATGCACCTGAGCTAACAAAAACCAAGAAAACCACAACAAAGACAGATGTTTACAGCCTTGGAGTCATAATATTGGAACTTTTGACTGGAAAATCTCCTGGAGAAGCCATGGATGGGATGGATTTACCTCAGTGGGTGGCCTCAATAGTTAAGGAGGAGTGGACCAATGAAGTATTTGATTTGGAGCTTATGAAAGATACGCCAAATATTGGTGATGAACTTCTGAACACTTTGAAACTTGCCCTGCATTGTGTGGATCCCTCGCCGGCGGCTCGGCCAGATGTTCAGCAAATTCTCCAGCAACTGGAGGAGATTAAGGCAGCTTCCACTTCCGGTGATGGAGATGATGGCGCAAAAAATCAACCAGCAAATGAATAG 2586 45.67 MGKTHHSLSEFQARPLQLMQLFEQQTAVWCCSKLPSKNRKWKNQQWRNCSYWLIALIFTHILAFSLQPVSGQMWDGVAVTQGDYQALQALKSQLIDLKGVLRSWNGSNGACSGRWVGIKCVKGQVIAIQLPWKALAGRLSEEIGQLRELRKLSLHDNVISGAVPPSLGYLPNLRGVYLFNNKFSGSIPPSIGNLPLLQTLDLSNNLLTGEIPSALANSTKLIRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGSGNRTCPLGVLTLDHNIITGRVPASLGKMEWLQEISISENRISGAIPGEIGRLKRLRLLDLSNNAINGSFPSSFFNLSSLELLNVENNRLDSQISGDIDRLRNLSVVRLGKNRFSGEIPASFGNISAISQLDFSENNLTGAIPVSLARLLNLTSFNVSYNNLSGPVPILLSNKFNASSFVGNLQLCGFSTSSPCPPAPSPQNNLTSPSIDVMKPHRHRRLSVKDIILIAAGALLVLLLLLCAILLCCLLTKRAAKTNGKTTPKQAAARSIEKAAPGSTDVATGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFETEVAGLGKIRHSNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITSGLGYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPRLMTSAAATNVIATAGTQGYNAPELTKTKKTTTKTDVYSLGVIILELLTGKSPGEAMDGMDLPQWVASIVKEEWTNEVFDLELMKDTPNIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEIKAASTSGDGDDGAKNQPANE 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19536445 19539198 - MC05g_new0397 Mch5g1974 689393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1974 861 FunFam Leucine-rich repeat receptor-like protein kinase 555 646 - -
Mch5g1974 861 Gene3D Ribonuclease Inhibitor 240 357 IPR032675 -
Mch5g1974 861 MobiDBLite consensus disorder prediction 840 861 - -
Mch5g1974 861 Pfam Protein tyrosine and serine/threonine kinase 574 838 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1974 861 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 278 847 IPR052451 -
Mch5g1974 861 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515(InterPro)
Mch5g1974 861 Pfam Leucine Rich Repeat 197 217 IPR001611 GO:0005515(InterPro)
Mch5g1974 861 Pfam Leucine Rich Repeat 221 240 IPR001611 GO:0005515(InterPro)
Mch5g1974 861 Pfam Leucine Rich Repeat 416 437 IPR001611 GO:0005515(InterPro)
Mch5g1974 861 Pfam Leucine rich repeat 297 355 IPR001611 GO:0005515(InterPro)
Mch5g1974 861 FunFam Pollen receptor-like kinase 1 647 852 - -
Mch5g1974 861 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 245 462 - -
Mch5g1974 861 Gene3D Phosphorylase Kinase; domain 1 576 647 - -
Mch5g1974 861 Gene3D Transferase(Phosphotransferase) domain 1 648 856 - -
Mch5g1974 861 CDD STKc_IRAK 576 841 - -
Mch5g1974 861 Gene3D Ribonuclease Inhibitor 358 453 IPR032675 -
Mch5g1974 861 Gene3D Ribonuclease Inhibitor 80 239 IPR032675 -
Mch5g1974 861 SMART LRR_typ_2 146 170 IPR003591 -
Mch5g1974 861 SMART LRR_typ_2 194 218 IPR003591 -
Mch5g1974 861 SMART LRR_typ_2 342 366 IPR003591 -
Mch5g1974 861 SMART LRR_typ_2 318 341 IPR003591 -
Mch5g1974 861 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 81 232 - -
Mch5g1974 861 SUPERFAMILY L domain-like 108 451 - -
Mch5g1974 861 ProSiteProfiles Protein kinase domain profile. 570 841 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1974 861 SUPERFAMILY Protein kinase-like (PK-like) 574 842 IPR011009 -
Mch5g1974 861 PRINTS Leucine-rich repeat signature 318 331 - -
Mch5g1974 861 PRINTS Leucine-rich repeat signature 197 210 - -
Mch5g1974 861 Pfam Leucine rich repeat N-terminal domain 82 120 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1300 Mch-Chr3:15904144 Mch5g1974 Mch-Chr5:19536445 6.98E-13 dispersed
Mch5g1974 Mch-Chr5:19536445 Mch6g0772 Mch-Chr6:5336821 1.24E-78 dispersed
Mch5g1974 Mch-Chr5:19536445 Mch9g1420 Mch-Chr9:16572272 3.32E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77443 PF07714 PK_Tyr_Ser-Thr 3.70E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1974 - - - 0.0