Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1998 ATGAGTTGTAACGAGAAGAATAGAGGGGGAGATGATAGGAAAATCGAGCAGCCAGTTTTGAGGAAGTCTATTGAGGCAGAACAGAAACCAGTCATCCAAAATGGATCCATAACGGCCCAACAGTTGACGATCGATGAGAATCTTCTTGTTGACCCAAAATTACTGTTTATTGGATCGAAGATTGGCGAGGGTGCTCATGGGAAGGTTTACGAAGGCAGGTATCGAGATCAAATTGTGGCCATTAAAGTTCTTCATCGAGGGAGTACTCTAGAAGAAAGAGCGGCACTTGAGAATCGTTTTGCTCGTGAAGTTAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTTATTGGAGCTTGTAAAGATCCTCTAATGGTGATAGTTACAGAACTATTACCAGGGATGTCACTCAGGAAGTACCTAATGAGTAATCGTAAGCAACAGCTGGACCCTCGGTTGGCCATTAACTTTGCTTTGGATATTGCTCGTGCTATGGATTGTCTACATGCAAATGGGATCATACATAGAGATCTGAAACCTGACAATTTGTTGCTTACGGCAAATCAGAGGTCAGTAAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCCGAAACAGGGACTTATCGCTGGATGGCTCCTGAGTTGTATAGCACCGTGACATTGCGCCAGGGAGAGAAGAAGCATTACAACAACAAGGTTGATGTATACAGCTTCGGAATTGTCTTATGGGAACTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCATATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGCGACATACCAGCCGATCTAGCATTTATCGTACAGTCGTGTTGGGTTGAAGATCCCAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCATATCTATTTACACTCCCACCTCCTTCACCATCTTCACCAGCATCCGACACAACAGATACAGCAACAACCAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCTAGAGGAAAGTTTGGGTTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCTAAGAACTCGCAATAA 1122 44.56 MSCNEKNRGGDDRKIEQPVLRKSIEAEQKPVIQNGSITAQQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYRDQIVAIKVLHRGSTLEERAALENRFAREVNMMSRVKHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMSNRKQQLDPRLAINFALDIARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPADLAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPPPSPSSPASDTTDTATTSNGAITEFSARARGKFGFLRQLFAAKRAKNSQ 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19693486 19696702 + MC05g_new0405 Mch5g1998 689417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1998 373 Gene3D Transferase(Phosphotransferase) domain 1 138 339 - -
Mch5g1998 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 SUPERFAMILY Protein kinase-like (PK-like) 54 334 IPR011009 -
Mch5g1998 373 SMART serkin_6 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 Pfam Protein tyrosine and serine/threonine kinase 57 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 FunFam Kinase suppressor of Ras 1 44 134 - -
Mch5g1998 373 PRINTS Tyrosine kinase catalytic domain signature 131 144 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 PRINTS Tyrosine kinase catalytic domain signature 287 309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 PRINTS Tyrosine kinase catalytic domain signature 169 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 PANTHER SERINE-THREONINE PROTEIN KINASE 49 317 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch5g1998 373 ProSitePatterns Protein kinases ATP-binding region signature. 61 82 IPR017441 GO:0005524(InterPro)
Mch5g1998 373 CDD STKc_MAP3K-like 61 316 - -
Mch5g1998 373 ProSiteProfiles Protein kinase domain profile. 55 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1998 373 Gene3D Phosphorylase Kinase; domain 1 43 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1485 Mch-Chr1:16374469 Mch5g1998 Mch-Chr5:19693486 1.03E-93 dispersed
Mch4g2191 Mch-Chr4:23652879 Mch5g1998 Mch-Chr5:19693486 8.26E-139 dispersed
Mch5g1998 Mch-Chr5:19693486 Mch6g0114 Mch-Chr6:665767 3.86E-107 dispersed
Mch5g1998 Mch-Chr5:19693486 Mch8g1464 Mch-Chr8:10974363 3.73E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77444 PF07714 PK_Tyr_Ser-Thr 3.40E-61 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1998 - - - 0.0