Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g2005 GGGGGATGGCCGTGTCTTGAAGCATCATCGTGCATCAGTGCATGCATTTTGTGCCTCCTCCTCCTCCTCCTCCTCTCTCTCAATCTCACTATATTTTCCGGTTGCTTCGCATCCACACGTCTTCTCCGTCCAAACTTTCCGATTCCGATCAAAAATCCAGCTCTAAGTCCTGTCAAATTTTCCGAATTGAAATTGAGGATGGCTTCGAGGACTTGCATGAATGTGTCGTGCGGAACATCCTCCTCGACCGAGTGGAGGAAAGGTTGGGCTCTGCGATCTGGCGATTTTGCAACTCTCTGCGATAAGTGCGGGTCTGCTTACGAGCAGTCAATTTTCTGTGATGTGTTCCACTTAAAAGACTCTGGTTGGAGGGAGTGCACCTCATGTGGCAAGCATCTTCATTGTGGATGCATTGCTTCCAAGTTTCTGATGGAGCTTCATGACAGTGGGGGGGTGAGCTGCATAAGCTGCGCAAAAGTTTTAGGACTTCATACTACTGGTACTGGTGAAAAGCTGAATGGACTTAGCACATCACAAGTTCAAAATTCTGGTGAATTACAATCATTTTTAGTGGAAGATGGTAATGCTGATAGAATGAGGTTTATCCAGCCGGGAAACAAGACAGAGGTAAATGAGCTTAGGCAATCACTTCTATCTCAAAGCAATAACAAAAATGGATCCTTAGTTCAAATGAAACGCGAGGAAAATTTCCCTCCAGCGAAAGATGTTGGGTATCTCTGTTCCTTGGAATTCAATCAGGTGACGAATGGGTTGGATGAAGCTACTAAACAGGAAATCTGCAAAGCAGACAGTGGAACAAAATTTACTTATGATTCACTTGCTCTGGGTTGTGGTAACTCGAATCCTCTTCCTGGTGTTTCTATTGATGACAAAGAGGATAGCAAGTCATCCTCTCCTTTGCTTCTAGGTTCTAGATCTCGTCATCTTATTCCAAAGCCTGCACGTTCAGTATTTAACATAGGTTTAGAGCCAAATGCTAGCATGGTTTCACAAGTACGTGTTGCGAGGCCACCTGCTGAAGGGAGGGGACGGAATCAGTTGCTTCCTCGTTACTGGCCCAGGATTACGGACCAAGAACTGCAGCAGATATCTGGAGCTTCAAATTCCACTGTTGTGCCATTGTTTGAAAAGATGCTCAGTGCCAGTGATGCTGGTCGGATAGGCCGATTGGTTGTCCCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATCTCTCAGCCAGAGGGACTTCCTATAAGAATTCAAGATGTCAAAGGAAAAGAATGGGTGTTTCAATTCAGGTTTTGGCCCAATAATAACAGTAGAATGTATGTTTTGGAAGGTGTAACTCCCTGCATACAGTCCATGCAGCTACAAGCTGGAGATACTGTGACATTTAGCCGCATGGATCCTGAAGGCAAACTTATTATGGGATTTCGCAAAGCATCAAGCTCTTCTATAATGCAGGATACTCATCCAACTGCCCTTTCTACTGGTGGTCATTCGAGTGAATTTTTTTCAAGTTTTTTTGAAAACCTTCCTATTTTAAGTGGCCATTCTAGCCTTCTCCAGTCCTTGAAGGGCAACATGGATCCCCAGCTCAATTTATTGCCTGGGTACTTCAATCAACCTGGTGCTGATATGAGCTGGCAAAAGGCTGAGAAGCATGATGATAATTCAAGAGAGGGCTTGCTCCTGTCTTCAATGCTGGTACCAGAGAGAAAAAGAACTCGAAATATTGGGTCTAAAAGTAAAAGGCTGCTCATTGATTGTCAAGATGCTCTGGAGTTGAAACTCACTTGGGAAGAGGTGCAGGATTTGCTTCGTCCACCTCCAACTGTCAAACCGAGCAAGTTCATGGTTGAGGATCATGAATTTGAAGAATATGAAGAACCTCCAGTTTTTGGGAAGAGGAGCATTTTTGTGGTTCGTTCAACTTGGGGACAAGAGCAATGGGCACAGTGTGATGATTGCTCTAAATGGCGACGATTGCCAGTTGATGTACTTCTGCCGTCCAAGTGGACATGCGTGGAAAATATTTGGGATCAAAGCAGGAGTTCATGTTCTACACCCGAAGAATTGACAACAAGGGAACTGGAAAATCTTCTCAGATTGAATAAGGAATTCAAGAGGCAGAGAACGTTGGCTTTCAATAGGCCAATCCAGGATCATGAATCCTCCGGTCTGGATGCTCTGGCGAATGCTGCAACTTTAGGAGATAATGTCAGTGACCCAGGTGCTGCATCAGTTGCAACTACAACGAAACATCCGAGGCATCGTCCTGGTTGCTCATGCATTGTGTGCATCCAACCTCCCAGTGGAAAGGGAAAGCACAAACCGACATGCACGTGCAATGTTTGTATGACAGTTAAACGTAGATTTAAAACTCTAATGATGCGCAAAAAGAAGCGGCAATCAGAGCGTGAAGCTGAAATTGCACAGAAGAATCAGCTTAAGTGGGGCTCTAAAGATGAAACGGAGTTGGACAATACCTCGAGACATGTATCTCTGAACCTCGGTCCCTCTGAAAATGAAACCCAACTGACAAATGATTCTAGGAGCCAAAGTAATTTGGTCGAAACTGGCAAGGACCAATTAGATTTGAATTGCCATCCTGACCAAGAAAATGAAATAAAAGGGGTGTCAAACCGAGTGAGCATGATGAGTCTTGTTCAAATTGCAAGCCTGCCATTGGAGACTTACTTGAAGCAGAATGGTCTTACAAGTTTGTTATCAGAGCCACAGGTAAGTTCGGCATCACATGTGCCAGCGCAAGGTGCAAACGAGGTTGAAGGAGCTCTCAACGATGATGGGTGTTTTGCTTCTACCGCTCAAGATCAGGAAAGTGAGGAAGAAGAAAATCGCGAAAAGGATCAAAGTTGA 2883 44.68 GGWPCLEASSCISACILCLLLLLLLSLNLTIFSGCFASTRLLRPNFPIPIKNPALSPVKFSELKLRMASRTCMNVSCGTSSSTEWRKGWALRSGDFATLCDKCGSAYEQSIFCDVFHLKDSGWRECTSCGKHLHCGCIASKFLMELHDSGGVSCISCAKVLGLHTTGTGEKLNGLSTSQVQNSGELQSFLVEDGNADRMRFIQPGNKTEVNELRQSLLSQSNNKNGSLVQMKREENFPPAKDVGYLCSLEFNQVTNGLDEATKQEICKADSGTKFTYDSLALGCGNSNPLPGVSIDDKEDSKSSSPLLLGSRSRHLIPKPARSVFNIGLEPNASMVSQVRVARPPAEGRGRNQLLPRYWPRITDQELQQISGASNSTVVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASSSSIMQDTHPTALSTGGHSSEFFSSFFENLPILSGHSSLLQSLKGNMDPQLNLLPGYFNQPGADMSWQKAEKHDDNSREGLLLSSMLVPERKRTRNIGSKSKRLLIDCQDALELKLTWEEVQDLLRPPPTVKPSKFMVEDHEFEEYEEPPVFGKRSIFVVRSTWGQEQWAQCDDCSKWRRLPVDVLLPSKWTCVENIWDQSRSSCSTPEELTTRELENLLRLNKEFKRQRTLAFNRPIQDHESSGLDALANAATLGDNVSDPGAASVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLKWGSKDETELDNTSRHVSLNLGPSENETQLTNDSRSQSNLVETGKDQLDLNCHPDQENEIKGVSNRVSMMSLVQIASLPLETYLKQNGLTSLLSEPQVSSASHVPAQGANEVEGALNDDGCFASTAQDQESEEEENREKDQS 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19717009 19724025 - MC05g1595 Mch5g2005 689424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g2005 960 FunFam B3 domain-containing transcription repressor VAL1 360 487 - -
Mch5g2005 960 ProSiteProfiles B3 DNA-binding domain profile. 382 483 IPR003340 GO:0003677(InterPro)
Mch5g2005 960 Pfam B3 DNA binding domain 382 481 IPR003340 GO:0003677(InterPro)
Mch5g2005 960 SUPERFAMILY DNA-binding pseudobarrel domain 379 481 IPR015300 -
Mch5g2005 960 MobiDBLite consensus disorder prediction 800 857 - -
Mch5g2005 960 MobiDBLite consensus disorder prediction 832 857 - -
Mch5g2005 960 SMART B3_2 382 483 IPR003340 GO:0003677(InterPro)
Mch5g2005 960 MobiDBLite consensus disorder prediction 802 831 - -
Mch5g2005 960 Gene3D - 360 486 IPR015300 -
Mch5g2005 960 CDD B3_DNA 380 481 IPR003340 GO:0003677(InterPro)
Mch5g2005 960 ProSiteProfiles Zinc finger CW-type profile. 646 696 IPR011124 GO:0008270(InterPro)
Mch5g2005 960 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 67 924 - -
Mch5g2005 960 MobiDBLite consensus disorder prediction 917 960 - -
Mch5g2005 960 Gene3D - 65 110 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch5g2005 960 Coils Coil 692 712 - -
Mch5g2005 960 Pfam CW-type Zinc Finger 651 693 IPR011124 GO:0008270(InterPro)
Mch5g2005 960 MobiDBLite consensus disorder prediction 740 759 - -
Mch5g2005 960 Gene3D - 649 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1828 Mch-Chr1:18393687 Mch5g2005 Mch-Chr5:19717009 1.91E-187 dispersed
Mch3g0018 Mch-Chr3:173512 Mch5g2005 Mch-Chr5:19717009 5.81E-275 dispersed
Mch5g2005 Mch-Chr5:19717009 Mch9g0063 Mch-Chr9:496327 9.10E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43469 PF02362 B3 2.40E-15 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g2005 K09287 - csv:101213503 1551.95