Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g2005 | GGGGGATGGCCGTGTCTTGAAGCATCATCGTGCATCAGTGCATGCATTTTGTGCCTCCTCCTCCTCCTCCTCCTCTCTCTCAATCTCACTATATTTTCCGGTTGCTTCGCATCCACACGTCTTCTCCGTCCAAACTTTCCGATTCCGATCAAAAATCCAGCTCTAAGTCCTGTCAAATTTTCCGAATTGAAATTGAGGATGGCTTCGAGGACTTGCATGAATGTGTCGTGCGGAACATCCTCCTCGACCGAGTGGAGGAAAGGTTGGGCTCTGCGATCTGGCGATTTTGCAACTCTCTGCGATAAGTGCGGGTCTGCTTACGAGCAGTCAATTTTCTGTGATGTGTTCCACTTAAAAGACTCTGGTTGGAGGGAGTGCACCTCATGTGGCAAGCATCTTCATTGTGGATGCATTGCTTCCAAGTTTCTGATGGAGCTTCATGACAGTGGGGGGGTGAGCTGCATAAGCTGCGCAAAAGTTTTAGGACTTCATACTACTGGTACTGGTGAAAAGCTGAATGGACTTAGCACATCACAAGTTCAAAATTCTGGTGAATTACAATCATTTTTAGTGGAAGATGGTAATGCTGATAGAATGAGGTTTATCCAGCCGGGAAACAAGACAGAGGTAAATGAGCTTAGGCAATCACTTCTATCTCAAAGCAATAACAAAAATGGATCCTTAGTTCAAATGAAACGCGAGGAAAATTTCCCTCCAGCGAAAGATGTTGGGTATCTCTGTTCCTTGGAATTCAATCAGGTGACGAATGGGTTGGATGAAGCTACTAAACAGGAAATCTGCAAAGCAGACAGTGGAACAAAATTTACTTATGATTCACTTGCTCTGGGTTGTGGTAACTCGAATCCTCTTCCTGGTGTTTCTATTGATGACAAAGAGGATAGCAAGTCATCCTCTCCTTTGCTTCTAGGTTCTAGATCTCGTCATCTTATTCCAAAGCCTGCACGTTCAGTATTTAACATAGGTTTAGAGCCAAATGCTAGCATGGTTTCACAAGTACGTGTTGCGAGGCCACCTGCTGAAGGGAGGGGACGGAATCAGTTGCTTCCTCGTTACTGGCCCAGGATTACGGACCAAGAACTGCAGCAGATATCTGGAGCTTCAAATTCCACTGTTGTGCCATTGTTTGAAAAGATGCTCAGTGCCAGTGATGCTGGTCGGATAGGCCGATTGGTTGTCCCAAAAGCATGTGCTGAAGCATATTTCCCTCCAATCTCTCAGCCAGAGGGACTTCCTATAAGAATTCAAGATGTCAAAGGAAAAGAATGGGTGTTTCAATTCAGGTTTTGGCCCAATAATAACAGTAGAATGTATGTTTTGGAAGGTGTAACTCCCTGCATACAGTCCATGCAGCTACAAGCTGGAGATACTGTGACATTTAGCCGCATGGATCCTGAAGGCAAACTTATTATGGGATTTCGCAAAGCATCAAGCTCTTCTATAATGCAGGATACTCATCCAACTGCCCTTTCTACTGGTGGTCATTCGAGTGAATTTTTTTCAAGTTTTTTTGAAAACCTTCCTATTTTAAGTGGCCATTCTAGCCTTCTCCAGTCCTTGAAGGGCAACATGGATCCCCAGCTCAATTTATTGCCTGGGTACTTCAATCAACCTGGTGCTGATATGAGCTGGCAAAAGGCTGAGAAGCATGATGATAATTCAAGAGAGGGCTTGCTCCTGTCTTCAATGCTGGTACCAGAGAGAAAAAGAACTCGAAATATTGGGTCTAAAAGTAAAAGGCTGCTCATTGATTGTCAAGATGCTCTGGAGTTGAAACTCACTTGGGAAGAGGTGCAGGATTTGCTTCGTCCACCTCCAACTGTCAAACCGAGCAAGTTCATGGTTGAGGATCATGAATTTGAAGAATATGAAGAACCTCCAGTTTTTGGGAAGAGGAGCATTTTTGTGGTTCGTTCAACTTGGGGACAAGAGCAATGGGCACAGTGTGATGATTGCTCTAAATGGCGACGATTGCCAGTTGATGTACTTCTGCCGTCCAAGTGGACATGCGTGGAAAATATTTGGGATCAAAGCAGGAGTTCATGTTCTACACCCGAAGAATTGACAACAAGGGAACTGGAAAATCTTCTCAGATTGAATAAGGAATTCAAGAGGCAGAGAACGTTGGCTTTCAATAGGCCAATCCAGGATCATGAATCCTCCGGTCTGGATGCTCTGGCGAATGCTGCAACTTTAGGAGATAATGTCAGTGACCCAGGTGCTGCATCAGTTGCAACTACAACGAAACATCCGAGGCATCGTCCTGGTTGCTCATGCATTGTGTGCATCCAACCTCCCAGTGGAAAGGGAAAGCACAAACCGACATGCACGTGCAATGTTTGTATGACAGTTAAACGTAGATTTAAAACTCTAATGATGCGCAAAAAGAAGCGGCAATCAGAGCGTGAAGCTGAAATTGCACAGAAGAATCAGCTTAAGTGGGGCTCTAAAGATGAAACGGAGTTGGACAATACCTCGAGACATGTATCTCTGAACCTCGGTCCCTCTGAAAATGAAACCCAACTGACAAATGATTCTAGGAGCCAAAGTAATTTGGTCGAAACTGGCAAGGACCAATTAGATTTGAATTGCCATCCTGACCAAGAAAATGAAATAAAAGGGGTGTCAAACCGAGTGAGCATGATGAGTCTTGTTCAAATTGCAAGCCTGCCATTGGAGACTTACTTGAAGCAGAATGGTCTTACAAGTTTGTTATCAGAGCCACAGGTAAGTTCGGCATCACATGTGCCAGCGCAAGGTGCAAACGAGGTTGAAGGAGCTCTCAACGATGATGGGTGTTTTGCTTCTACCGCTCAAGATCAGGAAAGTGAGGAAGAAGAAAATCGCGAAAAGGATCAAAGTTGA | 2883 | 44.68 | GGWPCLEASSCISACILCLLLLLLLSLNLTIFSGCFASTRLLRPNFPIPIKNPALSPVKFSELKLRMASRTCMNVSCGTSSSTEWRKGWALRSGDFATLCDKCGSAYEQSIFCDVFHLKDSGWRECTSCGKHLHCGCIASKFLMELHDSGGVSCISCAKVLGLHTTGTGEKLNGLSTSQVQNSGELQSFLVEDGNADRMRFIQPGNKTEVNELRQSLLSQSNNKNGSLVQMKREENFPPAKDVGYLCSLEFNQVTNGLDEATKQEICKADSGTKFTYDSLALGCGNSNPLPGVSIDDKEDSKSSSPLLLGSRSRHLIPKPARSVFNIGLEPNASMVSQVRVARPPAEGRGRNQLLPRYWPRITDQELQQISGASNSTVVPLFEKMLSASDAGRIGRLVVPKACAEAYFPPISQPEGLPIRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASSSSIMQDTHPTALSTGGHSSEFFSSFFENLPILSGHSSLLQSLKGNMDPQLNLLPGYFNQPGADMSWQKAEKHDDNSREGLLLSSMLVPERKRTRNIGSKSKRLLIDCQDALELKLTWEEVQDLLRPPPTVKPSKFMVEDHEFEEYEEPPVFGKRSIFVVRSTWGQEQWAQCDDCSKWRRLPVDVLLPSKWTCVENIWDQSRSSCSTPEELTTRELENLLRLNKEFKRQRTLAFNRPIQDHESSGLDALANAATLGDNVSDPGAASVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLKWGSKDETELDNTSRHVSLNLGPSENETQLTNDSRSQSNLVETGKDQLDLNCHPDQENEIKGVSNRVSMMSLVQIASLPLETYLKQNGLTSLLSEPQVSSASHVPAQGANEVEGALNDDGCFASTAQDQESEEEENREKDQS | 960 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19717009 | 19724025 | - | MC05g1595 | Mch5g2005 | 689424 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g2005 | 960 | FunFam | B3 domain-containing transcription repressor VAL1 | 360 | 487 | - | - | |
Mch5g2005 | 960 | ProSiteProfiles | B3 DNA-binding domain profile. | 382 | 483 | IPR003340 | GO:0003677(InterPro) | |
Mch5g2005 | 960 | Pfam | B3 DNA binding domain | 382 | 481 | IPR003340 | GO:0003677(InterPro) | |
Mch5g2005 | 960 | SUPERFAMILY | DNA-binding pseudobarrel domain | 379 | 481 | IPR015300 | - | |
Mch5g2005 | 960 | MobiDBLite | consensus disorder prediction | 800 | 857 | - | - | |
Mch5g2005 | 960 | MobiDBLite | consensus disorder prediction | 832 | 857 | - | - | |
Mch5g2005 | 960 | SMART | B3_2 | 382 | 483 | IPR003340 | GO:0003677(InterPro) | |
Mch5g2005 | 960 | MobiDBLite | consensus disorder prediction | 802 | 831 | - | - | |
Mch5g2005 | 960 | Gene3D | - | 360 | 486 | IPR015300 | - | |
Mch5g2005 | 960 | CDD | B3_DNA | 380 | 481 | IPR003340 | GO:0003677(InterPro) | |
Mch5g2005 | 960 | ProSiteProfiles | Zinc finger CW-type profile. | 646 | 696 | IPR011124 | GO:0008270(InterPro) | |
Mch5g2005 | 960 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 67 | 924 | - | - | |
Mch5g2005 | 960 | MobiDBLite | consensus disorder prediction | 917 | 960 | - | - | |
Mch5g2005 | 960 | Gene3D | - | 65 | 110 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Mch5g2005 | 960 | Coils | Coil | 692 | 712 | - | - | |
Mch5g2005 | 960 | Pfam | CW-type Zinc Finger | 651 | 693 | IPR011124 | GO:0008270(InterPro) | |
Mch5g2005 | 960 | MobiDBLite | consensus disorder prediction | 740 | 759 | - | - | |
Mch5g2005 | 960 | Gene3D | - | 649 | 705 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g1828 | Mch-Chr1:18393687 | Mch5g2005 | Mch-Chr5:19717009 | 1.91E-187 | dispersed | |
Mch3g0018 | Mch-Chr3:173512 | Mch5g2005 | Mch-Chr5:19717009 | 5.81E-275 | dispersed | |
Mch5g2005 | Mch-Chr5:19717009 | Mch9g0063 | Mch-Chr9:496327 | 9.10E-15 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43469 | PF02362 | B3 | 2.40E-15 | CL0405 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g2005 | K09287 | - | csv:101213503 | 1551.95 |