Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g2010 ATGCTTTTCAAACTAATCCTTCTTCTCCTCTTAACTCCTGCTGCTGTTTACTGTTTGGATACTGTCTTCAACGATGACGTTCTTGGCCTCATAGTTTTCAAAGCTGGCCTCCAAGATCCCATGGGCAAACTGGTGACGTGGAATGAAGACGATGAAAATCCCTGCAACTGGTTCGGTGTCAAATGCAATCCTAAAACCAATAGGGTCTCCGAACTTGTCCTCGATGGATTCTCATTGTCTGGACACATCGATCGTGGCCTTCTGAGGTTGCAATTTCTTCAAATTCTCTCACTTTCCAACAACAATTTCACTGGCACCATAAACTCTGCTCTTGCTCATCTGGGAAATTTGCAAGTTATTGATTTGAGTCGTAACAGTTTATCAGGACCCATTCCTGAACAACTTTTCCAGCAATGTGGGTCTATACGGGTTATTTCCTTGGCCAGAAACAACCTCACAGGAAATATCCCTCAATCCTTAACCTCTTGCTTCTCTCTGGAGCTTCTCAACTTCTCATCCAACCACCTATCTGGGAAATTGCCTTCTGGGTTGTGGTATTTGAGGGGCCTCCAGTCCCTGGATCTCTCGGACAACTTGCTTGAGGGGCAGATTCCTCCAGGAATTCAAAATTTATACGATTTGAGATTTGTTTACTTACAGAAGAATCGATTTTCTGGAAAGCTCCCTGAGGATATTGGTGGCTGCTTACTTTTAAAATCAATCGATTTTAGTGATAATATCCTTTCTGGGGGTCTTCCAGAGTCAATGCAGATGCTCAGTTCCTGCACTTATCTGAATTTACGACGAAATTCTTTCACGGGTGAAGTCCCTCGTTGGATTGGGGAGCTTAAAAACCTCGAGACTTTGGATCTTTCTGCCAATAACTTTTCTGGTCAGGTCCCAAGTTCAATAGGCAACCTTCAATTGTTGAAGAAGTTTAATGTATCCACGAACTACTTAAGTGGAAACTTGCCAGAATCCATGGAAAATTGTGTTAACCTTTTGAGCATTGATGCTAGCCATAACCATTTGAGTGGAAATCTCCCTTCATGGATTTTTGGGGCAGCTATGCCAAGCCTTCAGCTTTCTGCCAACGCATCATTTCCAACCTCTGTTGAGGGTCTTCAAGTTTTAGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAAGTTAGTAACTTGCAGTTGCTGAATATATCCAGAAACCATCTGGTGGGTTCTATTCCACAGAGCGTTGGTAAACTAAAATTTGTGTATGCCCTTGACTTCAGTGGCAATCAATTAAATGGAAGTATTCCTGCTGAAATTGGAGGAGCAATTTCGCTCAAGGAGTTGAGGCTCGAGAAAAACTTCCTCACTGGGGAAATTCCAATCAAGATTGACCAATGCTCCTTCTTAACATCATTGATTCTTTCCCACAACAACCTGACAGGCCCAATTCCTGCTGCTGTTGCGAATCTCTCCAACCTTGAAAATGTGGACTTATCTTTCAATAAGCTCTCTGGAAGCTTGCCCAAGGAGCTCACTAATCTTTCCCACCTCCTCTCCTTTAACATCTCCCACAATCATCTTGAGGGCGAACTCCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACTTAACCCATCTCTTTGCGGTGCCATTGTCAATAGGTCCTGCCCCTCCGTGCATCCGAAGCCTATCGTCCTAAACCCGAACTCTTCTGATACTAATGGCAGTTCCCCCTCTCACAAGTATCATCATGATATTATACTCAGCATATCTTCCATTGTTGCTATTGGTGCTGCTTCTTTCATCTTACTTGGTGTAGTAGCTGTAACTATCCTCAATATCCGTGCGAGGTCTTCGCAGTCGCGTTCTGCTGCTCTTGCATTATCTGCTGGGGAGGATTTCAGCTGCTCCCCCAAAACTAATCCAGACTATGGAAAACTCGTCATGTTTTCTGGAGATGCAGAGTTCGTAGTTGGTGCCCAAGCATTGCTGAACAAGGACTGTGAACTTGGTCGGGGTGGGTTCGGAGTTGTTTACCGAACAGTGCTTCGAGACGGGTGTTTAGTTGCAATCAAGAAGCTAACAGTCACGGGCTTGATCAAGTCGCGAGAAGATTTTGAGAATGAAGTAAAGAAGCTGGGACAGATGAGGCATGGCAATCTTGTGGCGCTTGAAGGGTATTACTGGACAACCTCCTTGCAACTTCTCATTTATGAATATGTCCCGAATGGAAGTTTGTATAAGCATTTACATGATGGAACTGGCGACAATTGTTTGTCTTGGCAGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCGCAATAATATAATTCATTACAATTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGTAAGCCAAAAGTGGGGGACTATGGCTTGGCAAGGTTGTTGCCGATGTTAGACCGCTGCATTTTAAGCAGTAAAATCCAAAGTGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGTATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGGGCGGCTTTAGATGAAGGCACAGTCGAGCAGTGTGTGGACGAGAGGCTCCGATCAAACTTCCGTGTCGAAGAGGCCATTCCTGTAATTAAACTGGGTTTGATATGTGCATCTCAAGTACCATCAAACAGGCCAGACATGAATGAGGTTGTCAATATATTAGAGTTGATCCAATCCCCCTCCGAAGCCGACGAGGAGTTGGAATGA 2862 43.89 MLFKLILLLLLTPAAVYCLDTVFNDDVLGLIVFKAGLQDPMGKLVTWNEDDENPCNWFGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLSNNNFTGTINSALAHLGNLQVIDLSRNSLSGPIPEQLFQQCGSIRVISLARNNLTGNIPQSLTSCFSLELLNFSSNHLSGKLPSGLWYLRGLQSLDLSDNLLEGQIPPGIQNLYDLRFVYLQKNRFSGKLPEDIGGCLLLKSIDFSDNILSGGLPESMQMLSSCTYLNLRRNSFTGEVPRWIGELKNLETLDLSANNFSGQVPSSIGNLQLLKKFNVSTNYLSGNLPESMENCVNLLSIDASHNHLSGNLPSWIFGAAMPSLQLSANASFPTSVEGLQVLDLSSNVFSGHIPSNVGEVSNLQLLNISRNHLVGSIPQSVGKLKFVYALDFSGNQLNGSIPAEIGGAISLKELRLEKNFLTGEIPIKIDQCSFLTSLILSHNNLTGPIPAAVANLSNLENVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNTISPLSISLNPSLCGAIVNRSCPSVHPKPIVLNPNSSDTNGSSPSHKYHHDIILSISSIVAIGAASFILLGVVAVTILNIRARSSQSRSAALALSAGEDFSCSPKTNPDYGKLVMFSGDAEFVVGAQALLNKDCELGRGGFGVVYRTVLRDGCLVAIKKLTVTGLIKSREDFENEVKKLGQMRHGNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDGTGDNCLSWQQRFKIVLGMAKGLAYLHRNNIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDEGTVEQCVDERLRSNFRVEEAIPVIKLGLICASQVPSNRPDMNEVVNILELIQSPSEADEELE 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19743626 19747918 - MC05g1599 Mch5g2010 689429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g2010 953 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Mch5g2010 953 SMART LRR_typ_2 283 307 IPR003591 -
Mch5g2010 953 SMART LRR_typ_2 114 138 IPR003591 -
Mch5g2010 953 SMART LRR_typ_2 396 420 IPR003591 -
Mch5g2010 953 SMART LRR_typ_2 492 515 IPR003591 -
Mch5g2010 953 SMART LRR_typ_2 516 540 IPR003591 -
Mch5g2010 953 SMART LRR_typ_2 187 210 IPR003591 -
Mch5g2010 953 SMART LRR_typ_2 211 235 IPR003591 -
Mch5g2010 953 SMART LRR_typ_2 90 113 IPR003591 -
Mch5g2010 953 SUPERFAMILY Protein kinase-like (PK-like) 673 942 IPR011009 -
Mch5g2010 953 ProSiteProfiles Protein kinase domain profile. 670 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2010 953 Pfam Leucine rich repeat 471 529 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 SUPERFAMILY L domain-like 41 360 - -
Mch5g2010 953 Gene3D Ribonuclease Inhibitor 291 565 IPR032675 -
Mch5g2010 953 ProSitePatterns Protein kinases ATP-binding region signature. 676 699 IPR017441 GO:0005524(InterPro)
Mch5g2010 953 CDD STKc_IRAK 676 942 - -
Mch5g2010 953 Pfam Leucine Rich Repeat 263 283 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Pfam Leucine Rich Repeat 398 420 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Pfam Leucine Rich Repeat 333 353 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Pfam Leucine Rich Repeat 375 393 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515(InterPro)
Mch5g2010 953 Gene3D Phosphorylase Kinase; domain 1 659 746 - -
Mch5g2010 953 Gene3D Transferase(Phosphotransferase) domain 1 747 952 - -
Mch5g2010 953 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 664 746 - -
Mch5g2010 953 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 24 302 - -
Mch5g2010 953 SMART LRR_sd22_2 492 518 - -
Mch5g2010 953 SMART LRR_sd22_2 187 213 - -
Mch5g2010 953 SMART LRR_sd22_2 283 309 - -
Mch5g2010 953 Pfam Protein tyrosine and serine/threonine kinase 672 938 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g2010 953 SUPERFAMILY RNI-like 252 553 - -
Mch5g2010 953 PANTHER OS05G0588300 PROTEIN 303 441 IPR050994 -
Mch5g2010 953 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Mch5g2010 953 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 303 566 - -
Mch5g2010 953 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 747 948 - -
Mch5g2010 953 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0924 Mch-Chr5:6839872 Mch5g2010 Mch-Chr5:19743626 1.55E-105 dispersed
Mch5g2010 Mch-Chr5:19743626 Mch9g1382 Mch-Chr9:16207679 1.83E-189 dispersed
Mch5g2010 Mch-Chr5:19743626 Mch4g2458 Mch-Chr4:25472963 4.78E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77446 PF07714 PK_Tyr_Ser-Thr 1.50E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g2010 - - - 0.0