Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g2014 ATGGTTTCGTCTCAGTTTTGTGGCTTGACCAACACTGGCAAGAATAACCTGATTCGAAGCCAGCTTCTTTTTCCTACAAACACCTCCGATACTGCACCTCTGGATTCTGTTAATTTGGATTTCTCTGACTTATTTGGCTCCATACCGCTTCATGCCTCAACTGAAGTGGAGGCTATTGATGTAGATCTTCATGTCTACCAGGAAGATTCACGTGAGCTTATTTATGATGATCCTGAAGTTATTTACAACCGGTCTCATTCTTTGGTCGGTCCCTCTTCTTGTGCAAGTAAATCTCTTAAGCTAAGCAATCTTACTATTACCGAGACCGAGGATTCAGGGGAATTAGTTGCCTGTATCAGCAAAGAGACCAACAGAAAACTTCTAGAACCTCCTAATGATTCTTTTACTGATACAATAATTGAAGGTGTTGATAGAAGTTACATGAAAGTTGAGAGTGTAGGTATTGACGACTTTGAAGTTCTGAAGGTTGTTGGGCAGGGTGCATTTGCGAGGGTTTATCAGGTGAGGCGAAAAGGTACGTTAGAGATATATGCCATGAAGGTCATGCGAAAGGACAAGATAATGGAGAAGAATCATGTTGAATACATGAAAGCTGAGAGGGATATTTTGACAAAAACTGACCATCCGTTTATTGTCCAGCTAAGATATTCATTCCAAACAAAATATAGGCTATATCTCGTTCTGGATTTTGTAAATGGTGGCCATCTTTTCTTTCAGCTTTACCACCATGGGCTTTTCAGAGAAGATCTTGCTCGTATTTATGCTGCCGAGATTGTTTCGGCAGTTTCTCACCTCCATTCAAATGGCATAATGCACAGAGATTTAAAACCTGAAAATATTTTGATGGATGACCTTGGCCATGTTATGTTGACTGATTTCGGTCTGGCAAAACAGTTTGAAGAGAATACAAGATCGAATTCTATGTGTGGAACTCTGGACTATATGTCACCGGAGATAGTTCTTGGGAAAGGTCATGACAAGGCTGCAGATTGGTGGAGTGTAGGAATACTGTTATTTGAAATGCTTACTGGGAAGCCTCCTTTTACTGGGAATCGGGAAAAAGTCCAGCAAAAGATAGTGAAGGACAAGATCAAGCTGCCGGCATTTTTATCTAGTGAAGCACATTCTCTCTTAAAAGGGCTGCTTCAAAAGGACGCGAGAAAGCGATTGGGCAGTGGGGCTATGGGAAGTGAGGAAATCAAGCGCCACAAGTGGTTCAAGCCAATCAATTGGAAGAAATTGGAGAAGCGGGAAATCCAACCAAGCTTTCGGCCTGAAGTGGCCGGGAAACACTGCGTTGCCAACTTTGAGAAGCGGTGGACTGAAATGCCACTTGTTGATTCTCCGGTAGCCAGCCCTAAAACCGAAGGGAATCCCTTCACCGGCTTCAGCTATGTCAAACCT 1425 42.74 MVSSQFCGLTNTGKNNLIRSQLLFPTNTSDTAPLDSVNLDFSDLFGSIPLHASTEVEAIDVDLHVYQEDSRELIYDDPEVIYNRSHSLVGPSSCASKSLKLSNLTITETEDSGELVACISKETNRKLLEPPNDSFTDTIIEGVDRSYMKVESVGIDDFEVLKVVGQGAFARVYQVRRKGTLEIYAMKVMRKDKIMEKNHVEYMKAERDILTKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILMDDLGHVMLTDFGLAKQFEENTRSNSMCGTLDYMSPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFTGNREKVQQKIVKDKIKLPAFLSSEAHSLLKGLLQKDARKRLGSGAMGSEEIKRHKWFKPINWKKLEKREIQPSFRPEVAGKHCVANFEKRWTEMPLVDSPVASPKTEGNPFTGFSYVKP 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19778079 19781425 - MC05g1603 Mch5g2014 689433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g2014 475 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524(InterPro)
Mch5g2014 475 SUPERFAMILY Protein kinase-like (PK-like) 155 464 IPR011009 -
Mch5g2014 475 Gene3D Phosphorylase Kinase; domain 1 155 454 - -
Mch5g2014 475 FunFam Non-specific serine/threonine protein kinase 155 261 - -
Mch5g2014 475 CDD STKc_AGC 164 413 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Mch5g2014 475 Gene3D Transferase(Phosphotransferase) domain 1 238 432 - -
Mch5g2014 475 PANTHER RIBOSOMAL PROTEIN S6 KINASE 125 474 - -
Mch5g2014 475 Pfam Protein kinase domain 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2014 475 MobiDBLite consensus disorder prediction 454 475 - -
Mch5g2014 475 Pfam Protein kinase C terminal domain 435 472 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2014 475 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 475 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2014 475 SMART serkin_6 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2014 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g2014 475 FunFam Non-specific serine/threonine protein kinase 238 432 - -
Mch5g2014 475 SMART pkinase_C_6 414 474 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2014 475 ProSiteProfiles Protein kinase domain profile. 158 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g2014 Mch-Chr5:19778079 Mch6g0191 Mch-Chr6:1276298 7.13E-163 dispersed
Mch5g2014 Mch-Chr5:19778079 Mch4g0368 Mch-Chr4:2323977 1.38E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77447 PF00069 Pkinase 1.10E-73 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g2014 K04688 - mdm:103423523 711.835