Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g2025 ATGGGCAACTGCGGTACCAGGGAAGAGTCTGCAGTTGTTTCCAATGCTCAAGTTCAACAGCTGCATACTTTATCATCTTCCTTGGCTGTGAAAAACGGCAGCAACAATGCTGCAGATAAAAGGCATATTCATAATCGGTCCATATCAGATCTAAGCGATCCTTCGACCCCTCGCAACCTCGAGGACTTCAGAAAGAATTCGGTGCTTTACACCCATGTTATCGCCTTCACGTTATACGAGCTGGAAACGATCACCAAGAGTTTCCGCTCCGATTATATTCTTGGAGAGGGCGGTTTCGGAACTGTTTATAAGGGTTACATTGATGAGAACGTCAGGGTTGGCCTCAAGTCTCTTCCTGTCGCTGTCAAGGTTCTCAATAGGGAAGGCCTCCAGGGCCACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTAAGACATCCAAACCTTGTAAAGTTGATTGGTTACTGCTGCGAGGACGATCATAGATTACTTGTCTATGAGTTCATGTTTCGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACGACTGTTCCATTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCAGCCAAGGGACTTGCTTTCCTTCATAATGCTGAAAGGCCTGTCATCTATCGGGATTTTAAAACCTCTAATATACTGTTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGACTTGCAAAAGCTGGACCACAAGGTGATGAGACCCATGTTTCAACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGGCACTTAACAGCAAGGAGTGATGTATACAGCTTCGGTGTTGTTCTTCTGGAGCTTTTGACAGGGAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTGGTAGATTGGGCCCGACCTAAACTAAATGACAAGAGGAAGCTGCTCCAAATAATTGACCCCAGATTGGAAAATCAATACTCGATAAGGGCAGCACAGAAGGCCTGCAGCCTGGCGTACTATTGCCTGAGCCAGAATCCGAAAGCAAGACCATTAATGAGCGATGTAGTTGAAACTTTGGAACCACTACAGAGCGGTAACGGTACAAGTGAATACTCATCAACGGGTAGTAGTCCATTTGTTAGAGGCGGCATCCCTGATTACAGGATGCGGCAAAGGTTTACCAACAATGTCGGTCCAGGGTCTAGTTGCCGGTCTCCTAACCCCAACTGTTCTCCAAGCGGCCCTGCAGCATGTAGGGTTAGATGA 1284 46.5 MGNCGTREESAVVSNAQVQQLHTLSSSLAVKNGSNNAADKRHIHNRSISDLSDPSTPRNLEDFRKNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNREGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLENQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGNGTSEYSSTGSSPFVRGGIPDYRMRQRFTNNVGPGSSCRSPNPNCSPSGPAACRVR 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19833341 19846200 + MC05g_new0414 Mch5g2025 689444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g2025 427 PANTHER OS01G0588500 PROTEIN-RELATED 65 369 IPR050823 -
Mch5g2025 427 SUPERFAMILY Protein kinase-like (PK-like) 63 366 IPR011009 -
Mch5g2025 427 MobiDBLite consensus disorder prediction 369 385 - -
Mch5g2025 427 FunFam Serine/threonine-protein kinase BIK1 55 170 - -
Mch5g2025 427 ProSitePatterns Protein kinases ATP-binding region signature. 94 123 IPR017441 GO:0005524(InterPro)
Mch5g2025 427 CDD STKc_IRAK 94 368 - -
Mch5g2025 427 MobiDBLite consensus disorder prediction 35 56 - -
Mch5g2025 427 Pfam Protein kinase domain 92 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2025 427 FunFam Probable serine/threonine-protein kinase PBL8 171 383 - -
Mch5g2025 427 MobiDBLite consensus disorder prediction 400 418 - -
Mch5g2025 427 Gene3D Phosphorylase Kinase; domain 1 54 170 - -
Mch5g2025 427 ProSiteProfiles Protein kinase domain profile. 88 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2025 427 Gene3D Transferase(Phosphotransferase) domain 1 171 382 - -
Mch5g2025 427 MobiDBLite consensus disorder prediction 369 427 - -
Mch5g2025 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g2025 Mch-Chr5:19833341 Mch6g1020 Mch-Chr6:7231172 9.77E-154 dispersed
Mch5g2025 Mch-Chr5:19833341 Mch6g0978 Mch-Chr6:6907427 2.37E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77448 PF07714 PK_Tyr_Ser-Thr 1.30E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g2025 - - - 0.0