Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g2026 GCTGTGGCGCTCGAGTCTCTAAAAAACGAATGGCAAAATACACCACCAAGCTGGGGAACATCAAATGATCCGTGTGGAGCTCCCTGGGAAGGAGTGACTTGCAACAATTCAAGAGTAACTGCATTGAGATTATCAACCATGGGCCTAAAGGGTAAACTTGGTGGCGACATCGGAGGCCTTACTGAACTGAGATCATTGGACCTTTCATTCAATAAAGATCTCACTGGTCCAATCTCCCCGGCATTAGGGGATCTACAGAAGTTGAATATCTTGATCCTAGCTGGGTGTGGATTTAGTGGCAATATTCCTGAAGAATTGGGCAATCTTCCTGAGCTATCCTTCTTGGCTTTAAATTCTAACAATTTCACTGGTACCATACCCCCAACTCTGGGAAAACTCTCCAATCTCTATTGGCTAGACCTGGCAGATAACCAATTGACAGGTGCTATCCCAGTCTCGACTTCTGAATCTCCGGGTTTGGACCTCCTTCTTAAAGCTAAACATTTTCATTTCAACAAAAACCAGCTATCAGGTACCATTTCACCTAAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAATAAACTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGAACCTTGAGGTTCTTCGACTTGATCGAAATTCTCTAACAGGAAATGTTCCATCAAATCTGAGCAACCTAATAAATATCAATGAATTGAATCTAGCTTACAATAAGTTGACAGGTCCACTGCCAAACTTAACTCAAATGAGTTCACTAAATTATGTGGACCTTAGTAACAACTCATTTGATTCATCAGCAGCTCCGGAATGGTTCTCAAATCTGCAATCTCTCACCACTTTGATTGTTGAATATGGGTCAATTAGAGGATCTGTGCCACAAGGAGTATTTAGCTTACCACAAATACAACAAGTAAAACTGAAGAACAATGAATTCAGTGAGACACTAAACATGGGTGATAGCATCGGCCAACAGCTGCAGCTCGTTGATTTGCAAAATAACAATATTTCCTCATTTACCCTTGGTTCAGGATATACCAGAACTTTGATGCTGATCGGCAATCCTGTGTGTAACACTGATGCCCTCTCAAATACGAACTATTGCCAGCTTCAAAAGCCGCCAGTGAAACCCTATTCTACCAGCCTTGCCAATTGTGGAAGTAAGTCATGTCCTCCTGATGAGAAGTTGAGCCCTCAAAGTTGTGAATGTGCCTATCCATATGAAGGAACTTTATACTTTAGAGGACCCTCGTTCAGGGAATTATCCAATGCGACTTTGTTTCATTCACTGGAAATGAAACTTTGGGTCAAACTTGACCTTACGCCTGGTTCAGTTTCTATTCAGAACCCTTTCTTTAATGTCGACGATTATCTTCAGATGCAGCTTGCACTTTTTCCACCCAATGGAAAGTATTTTAATAGGTCAGATATTCAGAGGATTGGGTTTGATCTGAGTAATCAAACTTTCAAACCTCCCCCACCATTTGGGCCATATTATTTCATTGCATCTCCCTATGCTTTTTCAGCCACGGATAGGGGAACTTCAATCAACACGGCAGTGATAATTGGTGTAGCTATTGGCTGTACCTTTCTCGTTCTAGGCCTCATTGGAGTTGGAGTATATGCAATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGATTGAGTAGACCATTTGCTTCTTGGGCACCAAGTGGAAACGATAGTGGAGGTGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAGCTTAAAAAATGCACAAATAATTTCTCCATTAGCAATGAGATAGGATCTGGAGGGTATGGCAAGGTATACAGAGGAATGCTTGTGGATGGACAAGTAGTTGCAATCAAAAGAGCCCAACAAGGATCAATGCAGGGTGGCAGCGAGTTCAAGACGGAAATTGAACTGCTTTCACGAGTTCATCACAAGAATCTTCTTGGCCTCGTGGGATTTTGTTTTGAGCAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGATCACTGAGAGAGAGCCTATCTGGAAAATCTGGTATTACTCTTGATTGGAAGAGAAGAGTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTACACGAGCTTGCTAACCCTCCCATAATCCATAGAGATATTAAGTCCACGAACATTCTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTTTCAGACAGTGAAAAGGGACACGTTTCTACGCAAGTTAAAGGCACATTGGGTTATTTGGATCCAGAATATTACATGACTCAACAGTTGACAGAGAAAAGTGATGTGTACAGTTTTGGAGTGGTTATGTTGGAATTGGTATCTGCCAAGCTGCCAATTGAGAAAGGAAAGTATATAGTTCGTGAGGTGCGTATGTTGATGAATAAGAATGAGGAAGAATATTATGGGTTGAAGCATATAATGGATGCAACCTTAATAAATAATACGACAAATATTAGTGGGTTTGGAAGGTTCTTGGAGTTGGCGATGCAATGCGTTGAAGAATCAGCTGCAGAACGTCCCACAATGAGTGAAGTGGTTAAGGCAATTGAGAGTATTTTGCAAAATGATGGAATAAATACTAACACCACATCTGCATCCTCATCTGCTACCGACTTTGGGACATCCAAAAATGCTCCCAGACATCCCTATAATGACAATAATGCTTTTGACTACAGCGGTGGATACACTCTTTCCACAAAAGTGGAACCAAAGTAG 2787 41.26 AVALESLKNEWQNTPPSWGTSNDPCGAPWEGVTCNNSRVTALRLSTMGLKGKLGGDIGGLTELRSLDLSFNKDLTGPISPALGDLQKLNILILAGCGFSGNIPEELGNLPELSFLALNSNNFTGTIPPTLGKLSNLYWLDLADNQLTGAIPVSTSESPGLDLLLKAKHFHFNKNQLSGTISPKLFSSEMVLIHILFDGNKLSGSIPPTLGLVKNLEVLRLDRNSLTGNVPSNLSNLININELNLAYNKLTGPLPNLTQMSSLNYVDLSNNSFDSSAAPEWFSNLQSLTTLIVEYGSIRGSVPQGVFSLPQIQQVKLKNNEFSETLNMGDSIGQQLQLVDLQNNNISSFTLGSGYTRTLMLIGNPVCNTDALSNTNYCQLQKPPVKPYSTSLANCGSKSCPPDEKLSPQSCECAYPYEGTLYFRGPSFRELSNATLFHSLEMKLWVKLDLTPGSVSIQNPFFNVDDYLQMQLALFPPNGKYFNRSDIQRIGFDLSNQTFKPPPPFGPYYFIASPYAFSATDRGTSINTAVIIGVAIGCTFLVLGLIGVGVYAIRQKKRAEKAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSISNEIGSGGYGKVYRGMLVDGQVVAIKRAQQGSMQGGSEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGSLRESLSGKSGITLDWKRRVRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELVSAKLPIEKGKYIVREVRMLMNKNEEEYYGLKHIMDATLINNTTNISGFGRFLELAMQCVEESAAERPTMSEVVKAIESILQNDGINTNTTSASSSATDFGTSKNAPRHPYNDNNAFDYSGGYTLSTKVEPK 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19850283 19855177 + MC05g1612 Mch5g2026 689445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g2026 928 FunFam Predicted protein 158 380 - -
Mch5g2026 928 Gene3D Phosphorylase Kinase; domain 1 576 677 - -
Mch5g2026 928 CDD STKc_IRAK 608 876 - -
Mch5g2026 928 Pfam Protein tyrosine and serine/threonine kinase 604 872 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g2026 928 Gene3D Ribonuclease Inhibitor 256 391 IPR032675 -
Mch5g2026 928 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 678 890 - -
Mch5g2026 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g2026 928 Pfam Leucine Rich Repeat 87 109 IPR001611 GO:0005515(InterPro)
Mch5g2026 928 Pfam Leucine Rich Repeat 261 284 IPR001611 GO:0005515(InterPro)
Mch5g2026 928 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Mch5g2026 928 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Mch5g2026 928 SMART serkin_6 602 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2026 928 FunFam Leucine-rich repeat protein kinase family protein 571 677 - -
Mch5g2026 928 Pfam Leucine rich repeat N-terminal domain 3 35 IPR013210 -
Mch5g2026 928 SUPERFAMILY Protein kinase-like (PK-like) 587 886 IPR011009 -
Mch5g2026 928 Gene3D Ribonuclease Inhibitor 191 255 IPR032675 -
Mch5g2026 928 SUPERFAMILY L domain-like 19 373 - -
Mch5g2026 928 PANTHER RECEPTOR-LIKE PROTEIN 55 16 874 - -
Mch5g2026 928 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524(InterPro)
Mch5g2026 928 MobiDBLite consensus disorder prediction 883 911 - -
Mch5g2026 928 Gene3D Ribonuclease Inhibitor 1 190 IPR032675 -
Mch5g2026 928 MobiDBLite consensus disorder prediction 883 906 - -
Mch5g2026 928 ProSiteProfiles Protein kinase domain profile. 602 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g2026 928 FunFam Leucine-rich repeat family protein 1 155 - -
Mch5g2026 928 Gene3D Transferase(Phosphotransferase) domain 1 678 902 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1486 Mch-Chr2:11215015 Mch5g2026 Mch-Chr5:19850283 0 dispersed
Mch3g0010 Mch-Chr3:81591 Mch5g2026 Mch-Chr5:19850283 4.42E-99 dispersed
Mch5g1136 Mch-Chr5:10017529 Mch5g2026 Mch-Chr5:19850283 0 dispersed
Mch5g2026 Mch-Chr5:19850283 Mch8g3147 Mch-Chr8:33763076 8.19E-78 dispersed
Mch5g2026 Mch-Chr5:19850283 Mch1g0602 Mch-Chr1:10190215 8.66E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77449 PF07714 PK_Tyr_Ser-Thr 5.30E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g2026 - - - 0.0