Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0007 ATGGATCCAGAAGCCCTCTCCGGCACTCTGTTCAAATGGGATCCTCGAGGCCTCCCACCACCACTACAGCCCTACTCCCTTGGGCGACTGGGAGGACTGGAGGAGCTGTTCCAGGCTTACGGTATCAGGTACTACACCGCCGCTAAAATTGCGGAACTTGGATTCACCGTCAGCACCCTCCTCGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTTCGCTGGGACCTTCTCGTGGGAGAGAGGTACGGAATCAAGGCAGCGGTGAGAGCCGAGCGCAGACGCCTAGATGACGAGATCGACTCCTCCAGGCGCCGTCACCTCTTCTCCAACGATACCACTACCAACGTCCTCGACGCTCTTTCTCAGGAAGGTCTATCGGAAGAGCCGGTGCAGCAGCAGGAGAAGGAGGTGGTGGGGAGCGGAGGAGGAGGATCATGGGAGGCTGTTGCAGTTGCGGAGAGGAAGCTGAAGCAGCGGAGGAGAAACGGAAAGAAGAAGCAGCAGCAGGTGATAGAGGAGGATCACGACGAAAACGACGGAGCTGGGGAGGAGGATCAGGACAATATAGAAGTGAACGAGAGACAGCGGGAGCATCCATTTATTGTAACCGAGCCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTACCTGTTCCACCTCTATGAGCAGTGCCGTGAATTTTTGATTCAAGTGCAGAACATTGCCAAGGAACGAGGTGAAAAATGCCCCACCAAGGTGACGAACCAGGTGTTCAGATATGCTAAGAAGGCGGGAGCAAGTTATATAAACAAGCCGAAAATGAGACACTACGTGCACTGCTATGCGCTGCATTGTCTGAACGAGGAGGAGTCGAATGCATTGAGGAGAGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTACAAGCCTCTGGTGGCCATAGCGGGTGCCCAAGGTTGGGACATTGATGCCATTTTCAACGCACATCCACGCCTCGCCATTTGGTATGTGCCTACCAAACTCCGTCAACTCTGCCATGCCGAGCGCAACAGCGCCACCGCCTCAACCTCCGCCGATCACCTCCCTTTTTAA 1113 54.63 MDPEALSGTLFKWDPRGLPPPLQPYSLGRLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDEIDSSRRRHLFSNDTTTNVLDALSQEGLSEEPVQQQEKEVVGSGGGGSWEAVAVAERKLKQRRRNGKKKQQQVIEEDHDENDGAGEEDQDNIEVNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLNEEESNALRRVFKERGENVGAWRQACYKPLVAIAGAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSATASTSADHLPF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 63546 65762 + MC06g0006 Mch6g0007 689454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0007 370 Gene3D Protein LEAFY 198 366 IPR038276 -
Mch6g0007 370 Coils Coil 92 112 - -
Mch6g0007 370 PANTHER PROTEIN LEAFY 30 365 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch6g0007 370 MobiDBLite consensus disorder prediction 164 204 - -
Mch6g0007 370 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 199 360 IPR035209 GO:0003677(InterPro)
Mch6g0007 370 Pfam Floricaula / Leafy protein SAM domain 29 105 IPR035079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0007 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0007 . 1 365 Orphan Transcription Factor Family AT5G61850 67.7 5.8e-125 444.5
Mch7g0133 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 1.9e-61 232.3
Mch10g1031 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.7e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43471 PF17538 C_LFY_FLO 1.20E-106 CL0123 Mch TF