Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0008 CCGCCGTCCCTTGCACATTCTCCTATAAAATCCACTATTGCAGCGACTAGCCGGCACGATGCGATCATCCAATCCCAATCGTTTCAATCGTCTATTCACACGGCTCTGTGCGTCGGGTCTCCCTCTATCTTCACCTTCCCGTCCTTCCATTTGCACTCCACTCTCATGGCCCAGGTTTCTCAGCTGCCCTGCGACGGAGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCGGACCTGGAGACCATCACTTGCAAAACTTGTGTCACCCCCTGGCACGTCGCCTGTCTCTCAAATCCCCCTGAAACCCTTGCATCTACCCTTCAATGGGACTGTCCCGACTGTTCCTCCCCTCCCGGAGATGTTCCGCTTCCTCCCCCCACTGCGCCTTCTAGTCACTTGGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTTCCTTACTGATCGTCAGAAGGCAAAGAAGCGCCAGGAGCTCCTCACCGGGAACTCTCACTCCGACAAGGATGATCGCGATGCCACCAACCGCAAAAGTCTAATAGGGGACGACGTTTTGGAATTGTTTGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCAGTCACAACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAATACTTGTGCAAAGTGCCGTTGTGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAATTCTACCCTTGTAGTGGCCATTCGTATGGCTAAAATGTCAAAATCAATTGTTTCTGGAGGACCTCAGAAGGTTTATCATTTCGTCCACAATCAGAATAGACCAGATAAAGCCTATACCACTGACCGTGCACAGAAGAAGGGAAAGGCTAATGCTGCAAGTGGAAAGATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCTGAAAACGACCCAGAGAGAAACCAGGGTGTGCTTGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCGGGGCAGTCAAGTAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAATGGTTCCTTTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACGAGCAAGGATCAGTCCTTTGACCAGAAATTTGAAAAATCAAACAAAGCCCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCTTCATATGCTCCAGAGAAGGGGTTGCGGTATGATGGGATTTATAGGATTGAGAAGTGTTGGCGTAAAGTTGGAATTCAGGGCTTTAAGGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGACGAACATGGAGATCGACCTAGAGCATTACCTGCAATTCCAGAGTTGAAAAAAGCGACAGATATTACGGAGAGAAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGTCGGTGGAAGTGGAGCAAACCTCCACCGACGAGTAAGAAACCAGTTGAAACCGAAGATTCAGCTTCTGGGAAGAGGTCAAGGAGAAAAGTTAGGCAATCGCAGAATATGAGCGTTAGAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGACTCTGCCGATCACTACGCCTTGTGCGCATAACTTTTGCAAGTCATGCTTGGAAGGTGCTTTTGTGGGCAAGACGTTCTTGAGAGAGAGAAGCAGTGGTGGGCGAGCTCTTAGATCTCAAAAAAACGTCATGACTTGTCCTTGTTGCCCGACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCGTTGAAGAGTAAGATTGAAGAAGGGGATACGTCGGAGAAGCTGTGTGAAGAAGGGACAGACGGGGAAGAGGAGGGAAAAGAGTGCAGTAGTCCTGTGGGTGTGGAAACAAGAAAGCGAGCAAAGGTGGTGGCTGATGGTGGGGAGGAGAATGGCGTGGGCGGTGATGGAGACGATTCGCCCTCAAGCCCCCTCCACGTTGATGATTTGGAGTGA 2148 48.42 PPSLAHSPIKSTIAATSRHDAIIQSQSFQSSIHTALCVGSPSIFTFPSFHLHSTLMAQVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVACLSNPPETLASTLQWDCPDCSSPPGDVPLPPPTAPSSHLVAAIRAIEADAFLTDRQKAKKRQELLTGNSHSDKDDRDATNRKSLIGDDVLELFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKMSKSIVSGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSSNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRALPAIPELKKATDITERKEGPSWDFDEKDSRWKWSKPPPTSKKPVETEDSASGKRSRRKVRQSQNMSVREKLLKEFSCLICREVMTLPITTPCAHNFCKSCLEGAFVGKTFLRERSSGGRALRSQKNVMTCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDTSEKLCEEGTDGEEEGKECSSPVGVETRKRAKVVADGGEENGVGGDGDDSPSSPLHVDDLE 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 69725 78346 + MC06g0007 Mch6g0008 689455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0008 715 ProSitePatterns Zinc finger PHD-type signature. 70 115 IPR019786 -
Mch6g0008 715 MobiDBLite consensus disorder prediction 478 524 - -
Mch6g0008 715 Gene3D - 293 490 IPR036987 -
Mch6g0008 715 SMART PHD_3 69 116 IPR001965 -
Mch6g0008 715 SUPERFAMILY RING/U-box 559 647 - -
Mch6g0008 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 261 IPR013083 -
Mch6g0008 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 523 653 IPR013083 -
Mch6g0008 715 CDD RING-HC_ORTHRUS_rpt1 190 237 IPR047498 -
Mch6g0008 715 SUPERFAMILY RING/U-box 185 240 - -
Mch6g0008 715 ProSiteProfiles Zinc finger PHD-type profile. 67 118 IPR019787 -
Mch6g0008 715 ProSiteProfiles Zinc finger RING-type profile. 194 233 IPR001841 -
Mch6g0008 715 SUPERFAMILY PUA domain-like 296 491 IPR015947 -
Mch6g0008 715 ProSiteProfiles Zinc finger RING-type profile. 566 622 IPR001841 -
Mch6g0008 715 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 56 665 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Mch6g0008 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 117 IPR013083 -
Mch6g0008 715 MobiDBLite consensus disorder prediction 654 715 - -
Mch6g0008 715 Pfam Zinc finger, C3HC4 type (RING finger) 194 232 IPR018957 GO:0046872(InterPro)
Mch6g0008 715 MobiDBLite consensus disorder prediction 478 554 - -
Mch6g0008 715 SUPERFAMILY FYVE/PHD zinc finger 62 122 IPR011011 -
Mch6g0008 715 ProSiteProfiles YDG domain profile. 322 470 IPR003105 -
Mch6g0008 715 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 140 261 - -
Mch6g0008 715 ProSitePatterns Zinc finger RING-type signature. 581 590 IPR017907 -
Mch6g0008 715 SMART G9a_1 317 474 IPR003105 -
Mch6g0008 715 SMART ring_2 194 232 IPR001841 -
Mch6g0008 715 SMART ring_2 566 622 IPR001841 -
Mch6g0008 715 Pfam RING-type zinc-finger 566 597 IPR027370 -
Mch6g0008 715 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 293 488 - -
Mch6g0008 715 MobiDBLite consensus disorder prediction 669 690 - -
Mch6g0008 715 Pfam SAD/SRA domain 324 473 IPR003105 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0008 K10638 - csv:116401648 1107.05