Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0009 ATGACCCAGCCTCTGAAGAAACCAAAAGTGGAGGAACTTTCCGTTTCCGATGCCCAACCAACTGCAATCGACGCGGTGGATGAATGCAATAGCACCGCGGAAGAGCAAGAGGCGGAGCTCTTGGCACTAGTCGAGCATCGTACTCGGGAAGTTCAACATCTGCAGCACCGTATTTCCTACTACACTCGTCAGCTAGAGGAAGCAGAGAAGCGATTGCAGGAATCTGAATCTATGTTGGCACGCTTTCGAGGTCGGCGTTATACTCTTTCATCAAAAAGTTCTCAAGACTCTGGATTCAAATGTGTGGAGGCTGAGCCTAGACCAGCCAGTCCTATTCATGCCAATGGAGGTTCCAAAGCAATAACAATTCTTGGTTCCAGTGCTCAAAAGAGCCCTTCAATTCTCAATCTTGCCATGACAGCTGAACAAGACAGGCCTTGTACAGTATCTTCTACTGAGGGAGTTGTTGAAGATGAAAGTGATAGAAGAAAAAGAAAGTTTGGTAATACTTCAACCTTCCGTTGGGTAACCTTGCAGTGCTATCTTCTTCATGCAACTTCGTTAGTTTCATATTCTATACAGTACCTCAGGTCCCTCATTCTTTTGTTTGGACTCGTGATGTTTGCATGTATACCAGAGCAGAAAGATCACAAAGAATTGATTCCATTAGTACGTAGTAGCTCATCGCCATTAACTGCCCAATGTGATAGAAGTTATTATTTCTCAAGTCAGCACAAGAGAAAAATGAGAAGTCTTGCTCCATGTCCAGTTAATGACCAGCTTTTTGTGACCAGTGCTTTGGATGGAATGATCAACTTGTGGCAAGTTCAGTACAAGGGGTCATCGGCCTCTCTACTTTGTACTACTGACTGTATGTCTCAAAAGCAGAGAAGATGGCCTGAAGATATAGCTTGGCACCCGGATGGAAACAGCCTATTTTCTGTGTACAGTGCCGATAGTGGTGACTCTCAAATATCGATCTTGAAATTCAACAAGACTAAAGAGAGGGCCTCTGTGATTTTCTTAGAGGATAAGCCTTATGTTAAAGGCATTATCAACAGCATCAGTTTCTTGCCCTGGGAATCTGTCCCTTTCATTACTGGTGGCAGTGACCATGCTGTCATTCTATGGAGTATGAAAGATAAAAAGAATACATGGAAGCCAGAACTGTTGCACAGAGACCTGCATTCTTCAGCTGTCATGGGCGTCTCTGGGATGCAGCTAAAGCAGATCGTACTTTCTGCTGGTGCAGACAAGAGGATCCTTGGTTTTGATGTTCAAGTAGGAAGCGTACTCTTCAAGCATCAATTAGAGAGCAAATGTATGAGTGTCTTGCCAAATCCATGTGATTTTAACCTGTTCATGGTCCAAACAGGGAGTCCAGAAAAGCAACTTCGGCTGTTTGACATTAGGTCAAAACAGAAAGAAGTCCACGGTTTTGGGTGGAAGCAAGAAAGCAGTGAATCTCAATCAGCTCTGATAAACCAGGCGTGGTCTCCTGATGGTTTGCACCTAACATCTGGTTCAGCTGATCCTGTAATTCATGTTTTTGATATCAGATATAATTCTCACATGCCATCTTGTTCAATTAAAGCTCATCAGAAACGTGTCTTTAAAGCTGTTTGGCTCCAGGCTCCGATTGGAAAACAAATGCATGGGAAGAGAACGGTATGTTCGGATGATGAATCGGAGGAAGAGAAGGCGTTGTTTCCGATGTACTCGGCTAGATCTCAACACGACATGTCGGCCATGGTGTGTGCCCTAGCTGAAGTCATCAAATCCAACCGAACCCCTTCAGATCATACAACTTCACAACCGCAACCACCACAACCGCAGCCACATGAAGATAATGATCAACAAGGCAGGCGTAGCGGCGGAAGCTGCAGCAGAAGAAGACACTATCGTGGAGTAAGGCAGAGACCGTGGGGCAAGTGGGCGGCCGAGATCCGTGATCCGAAAAAGGCAGCTAGAGTTTGGCTGGGGACTTTCGACACTGCCGAGGCTGCCGCACTTGCTTACGACCAAGCTGCCCTCAGCTTCAAAGGAACCAAAGCAAAGCTCAATTTCCCAGAGAGGCTTCAGCCTCAGCCTCACAACTTCTTCTTCAACGCTCCTCCTCCTCACCCTCACAACCTCTTCTTCAACGCTCCTCCTCCCACTTTTAATTCTTCTCATCAGGATCACGAACAGGAACAGGAACAAGATGCTGCACCCCCCAACTGA 2223 46.02 MTQPLKKPKVEELSVSDAQPTAIDAVDECNSTAEEQEAELLALVEHRTREVQHLQHRISYYTRQLEEAEKRLQESESMLARFRGRRYTLSSKSSQDSGFKCVEAEPRPASPIHANGGSKAITILGSSAQKSPSILNLAMTAEQDRPCTVSSTEGVVEDESDRRKRKFGNTSTFRWVTLQCYLLHATSLVSYSIQYLRSLILLFGLVMFACIPEQKDHKELIPLVRSSSSPLTAQCDRSYYFSSQHKRKMRSLAPCPVNDQLFVTSALDGMINLWQVQYKGSSASLLCTTDCMSQKQRRWPEDIAWHPDGNSLFSVYSADSGDSQISILKFNKTKERASVIFLEDKPYVKGIINSISFLPWESVPFITGGSDHAVILWSMKDKKNTWKPELLHRDLHSSAVMGVSGMQLKQIVLSAGADKRILGFDVQVGSVLFKHQLESKCMSVLPNPCDFNLFMVQTGSPEKQLRLFDIRSKQKEVHGFGWKQESSESQSALINQAWSPDGLHLTSGSADPVIHVFDIRYNSHMPSCSIKAHQKRVFKAVWLQAPIGKQMHGKRTVCSDDESEEEKALFPMYSARSQHDMSAMVCALAEVIKSNRTPSDHTTSQPQPPQPQPHEDNDQQGRRSGGSCSRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDQAALSFKGTKAKLNFPERLQPQPHNFFFNAPPPHPHNLFFNAPPPTFNSSHQDHEQEQEQDAAPPN 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 79499 100387 - MC06g0008 Mch6g0009 689456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0009 740 FunFam Ethylene-responsive transcription factor 2 632 691 - -
Mch6g0009 740 SUPERFAMILY WD40 repeat-like 240 542 IPR036322 GO:0005515(InterPro)
Mch6g0009 740 ProSiteProfiles AP2/ERF domain profile. 633 690 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0009 740 Pfam AP2 domain 633 682 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0009 740 PRINTS Ethylene responsive element binding protein signature 634 645 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0009 740 PRINTS Ethylene responsive element binding protein signature 656 672 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0009 740 MobiDBLite consensus disorder prediction 596 640 - -
Mch6g0009 740 Gene3D - 449 564 IPR015943 GO:0005515(InterPro)
Mch6g0009 740 MobiDBLite consensus disorder prediction 714 740 - -
Mch6g0009 740 SMART rav1_2 633 696 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0009 740 SUPERFAMILY DNA-binding domain 633 691 IPR016177 GO:0003677(InterPro)
Mch6g0009 740 Gene3D AP2/ERF domain 632 692 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0009 740 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 2 544 - -
Mch6g0009 740 SMART WD40_4 335 378 IPR001680 GO:0005515(InterPro)
Mch6g0009 740 SMART WD40_4 232 275 IPR001680 GO:0005515(InterPro)
Mch6g0009 740 SMART WD40_4 387 425 IPR001680 GO:0005515(InterPro)
Mch6g0009 740 SMART WD40_4 481 518 IPR001680 GO:0005515(InterPro)
Mch6g0009 740 Gene3D - 212 446 IPR015943 GO:0005515(InterPro)
Mch6g0009 740 CDD AP2 633 691 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0009 740 Pfam WD domain, G-beta repeat 497 518 IPR001680 GO:0005515(InterPro)
Mch6g0009 740 Coils Coil 51 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0009 Mch-Chr6:79499 Mch7g1201 Mch-Chr7:15660266 5.94E-23 dispersed
Mch9g0942 Mch-Chr9:7684745 Mch6g0009 Mch-Chr6:79499 3.66E-18 dispersed
Mch1g1057 Mch-Chr1:13525859 Mch6g0009 Mch-Chr6:79499 4.63E-29 transposed
Mch2g1456 Mch-Chr2:10758215 Mch6g0009 Mch-Chr6:79499 2.10E-27 transposed
Mch4g1896 Mch-Chr4:21620142 Mch6g0009 Mch-Chr6:79499 1.19E-28 transposed
Mch7g0019 Mch-Chr7:180317 Mch6g0009 Mch-Chr6:79499 7.81E-35 transposed
Mch3g1315 Mch-Chr3:15960818 Mch6g0009 Mch-Chr6:79499 3.22E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43472 PF00847 AP2 2.40E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0009 - - - 0.0