Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0012 ATGGCCTCCTCCGAGGTTTCCATCAACCCCAATTCTGCCAAAGACCCCGATCCACCCATCGCTCTCTCTGCCAGGGATGCTGAAATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTCCCTCGCGAGAAAGAGCGCGTCTTCTACTTCCCCCAGGGCCACATCGAACAGGTGGAAGCATCCACTAATCAAGTGGCGGACCAACAGATGCCTGTTTATAACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTTCACTTAAAGGCTGAGCCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATGCTGTGGACAAGGAACCCCCTCCTCCTCCCCCACGGAGATTTCATGTGCATTCCTTTTGCAAGACTCTGACTGCTTCTGACACCAGTACTCATGGGGGATTCTCAGTCTTGAGACGCCATGCTGACGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCAACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAGTGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGATTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGAGCCATGAGACAACATGGCAATGTCCCCTCGTCAGTCATATCTAGTCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACGATGTTCACCGTCTATTATAAGCCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCCATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAAGCTCCTGAGCAGAGATTCACGGGCACTATCATTGGATGTGAAGATGCTGATCCCAAGAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCACGTCCTGAGAGAGTCTCACCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTAAACCCAATTCCAATTACTAGGCCTAAAAGGCCTCGATCAAATATGGTGCCTACATCCCCTGATTCCTCTGTCCTTACACGAGAAGGCTCATCAAGATTGGCTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAGGAATTCTCGACCTTGAGAGGCAATTTTGGTGATGGTAATGACCCTGATGCAGCTGAAAAGTCTGTTATGTGGCCTCCTTCACTTGATGATGAGAAGATTGATGTGGTTTCCACGCCTAATAAACATGGAGCAGACAGCTGGATGCCTCCAGGAAGGAGCGAGACAACCTATGCAGATCTTCTGTCAGGTTTTGGAACTAATCTTGATTCTCCGCATGGTGTCCGAGCTGCCATGGGAGATTCAGCAGTAGTAGCTGCGAGTTCAATCAGAAAGCATGCAATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGGTCATGGTCTGTCATGTCTTCTGGTGGTCTCTCGCTCAACCTGGTTGACTCTAGTCAGAAGGCTCATATTCAGGGTGGTGACTTACCTTACCAAGTGAGAGGAAATGCTACCTTTAATGGCTTCGGTGATCATACCATGGCCCATTGTCATGGAGTTGAACACTCTCGGGGAAACTGGTTCATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCATTCAACTGAATTGATGTCGAAGCCCATGTTATTTCAGAACCAAGATGTTCTCAAACCCAAAGATGACCCTGCAGGATTTAATAGAAATATGATGAACGAGGCAGATGTTGTGCATCTTAATACACATCAAATGCATTCAAACGAGTCTGGCCTCAAGTCTGAATTATCTAAGGGTTCAAAGTTGGTGGATAAATCCCTTGCTGTCATTGAGGTCGATAAATCACAGCAAACATGCACACAGAACTTGAAGGATGCGCAGAGCAAATCACAGGGTGGTTCAACGAGGAGTTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGAATTGGCTCATCGTATATACGGATGATGAAGGTGATATGA 2175 47.08 MASSEVSINPNSAKDPDPPIALSARDAEIALYTELWNACAGPLVSVPREKERVFYFPQGHIEQVEASTNQVADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEDAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPERVSPWKIEPALAPPALNPIPITRPKRPRSNMVPTSPDSSVLTREGSSRLAVDPSPASAFTRVLQGQEFSTLRGNFGDGNDPDAAEKSVMWPPSLDDEKIDVVSTPNKHGADSWMPPGRSETTYADLLSGFGTNLDSPHGVRAAMGDSAVVAASSIRKHAMDQDGKFNFLGGRSWSVMSSGGLSLNLVDSSQKAHIQGGDLPYQVRGNATFNGFGDHTMAHCHGVEHSRGNWFMPPPSSHFDYPVHSTELMSKPMLFQNQDVLKPKDDPAGFNRNMMNEADVVHLNTHQMHSNESGLKSELSKGSKLVDKSLAVIEVDKSQQTCTQNLKDAQSKSQGGSTRSCTKVHKQGIALGRIGSSYIRMMKVI 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 110952 117106 + MC06g0011 Mch6g0012 689459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0012 724 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677(InterPro)
Mch6g0012 724 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 712 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch6g0012 724 Gene3D - 134 239 IPR015300 -
Mch6g0012 724 MobiDBLite consensus disorder prediction 386 403 - -
Mch6g0012 724 SUPERFAMILY DNA-binding pseudobarrel domain 134 266 IPR015300 -
Mch6g0012 724 CDD B3_DNA 135 237 IPR003340 GO:0003677(InterPro)
Mch6g0012 724 FunFam Auxin response factor 135 239 - -
Mch6g0012 724 FunFam Auxin response factor 300 372 - -
Mch6g0012 724 MobiDBLite consensus disorder prediction 374 411 - -
Mch6g0012 724 SMART B3_2 137 239 IPR003340 GO:0003677(InterPro)
Mch6g0012 724 Gene3D - 300 370 - -
Mch6g0012 724 MobiDBLite consensus disorder prediction 1 20 - -
Mch6g0012 724 Pfam Auxin response factor 263 345 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch6g0012 724 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0367 Mch-Chr2:2735698 Mch6g0012 Mch-Chr6:110952 4.32E-124 dispersed
Mch6g0012 Mch-Chr6:110952 Mch6g2320 Mch-Chr6:25135217 1.31E-155 dispersed
Mch6g0012 Mch-Chr6:110952 Mch1g2064 Mch-Chr1:20009579 1.99E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43473 PF02362 B3 5.40E-21 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0012 K14486 - csv:101206845 1246.11