Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0056 ATGGAGAGCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCCCAGGCCCCCGTCCCGGCCCCTCCCTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATAGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCCCGCATTAAGAAGATTATGAAAGCCGATGAGGACGTCCGCATGATCTCCGCCGAGGCTCCCATTTTGTTCGCCAAGGCATGCGAGCTTTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAACGATATAGCAGCCGCCATTACGAGGACCGATATCTTTGATTTCTTAGTCGATATTGTGCCTAGGGACGAGATCAAGGACGAGGCTGGCTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTGCCCTACTATTATCCGCCTATGGGCCAACCGGCCGGAGCTCCGGGGGGGATGATGATTGGGAGACCGGCCATGGATCCCACCGGAGTTTATGCGCAGCCGCCGTCACAGGCCTGGCAATCGGTGTGGCAGACCGCGGCGGAGGACGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGCCAGAGCTAA 663 56.86 MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 330313 337114 + MC06g0050 Mch6g0056 689503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0056 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982(InterPro)
Mch6g0056 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch6g0056 220 MobiDBLite consensus disorder prediction 1 23 - -
Mch6g0056 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
Mch6g0056 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Mch6g0056 220 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0830 Mch-Chr10:5788331 Mch6g0056 Mch-Chr6:330313 1.06E-29 dispersed
Mch4g0926 Mch-Chr4:7158256 Mch6g0056 Mch-Chr6:330313 1.68E-66 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43476 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0056 - - - 0.0