Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0056 ATGGAGAGCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCCCAGGCCCCCGTCCCGGCCCCTCCCTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATAGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCCCGCATTAAGAAGATTATGAAAGCCGATGAGGACGTCCGCATGATCTCCGCCGAGGCTCCCATTTTGTTCGCCAAGGCATGCGAGCTTTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAACGATATAGCAGCCGCCATTACGAGGACCGATATCTTTGATTTCTTAGTCGATATTGTGCCTAGGGACGAGATCAAGGACGAGGCTGGCTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTGCCCTACTATTATCCGCCTATGGGCCAACCGGCCGGAGCTCCGGGGGGGATGATGATTGGGAGACCGGCCATGGATCCCACCGGAGTTTATGCGCAGCCGCCGTCACAGGCCTGGCAATCGGTGTGGCAGACCGCGGCGGAGGACGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGCCAGAGCTAA 663 56.86 MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 330313 337114 + MC06g0050 Mch6g0056 689503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0056 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982(InterPro)
Mch6g0056 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch6g0056 220 MobiDBLite consensus disorder prediction 1 23 - -
Mch6g0056 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
Mch6g0056 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Mch6g0056 220 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0056 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0830 Mch-Chr10:5788331 Mch6g0056 Mch-Chr6:330313 1.06E-29 dispersed
Mch4g0926 Mch-Chr4:7158256 Mch6g0056 Mch-Chr6:330313 1.68E-66 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0056 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.3e-89 323.6
Mch4g0926 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 6.2e-52 201.1
Mch4g0926 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.9 4.1e-48 188.3
Mch6g0056 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 6.8e-43 171.0
Mch4g0926 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 4.7e-54 208.0
Mch6g0056 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.7e-51 199.5
Mch6g0056 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.4e-38 155.2
Mch6g0056 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 6.8e-81 297.4
Mch4g0926 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.1e-49 193.7
Mch4g0926 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.6e-64 242.7
Mch6g0056 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 3.8e-50 194.9
Mch9g1703 . 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.6 4.7e-57 218.4
Mch8g0111 . 3 134 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.2 3.2e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43476 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Mch TF