Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0098 ATCACCAGGCTCGTATTCAACGCCAAAGGTCTCGCCGGTTCTCTTTCTCCGGCTATTGGACGCCTCACGGAGTTGAAAGAGCTTACGGTTTCTAACAATCGCCTCGTTGACCAAGTACCGCCCCAAATTGTTGACTGCCGGAAACTTGAAATTCTCGATCTCCAAAACAACCAGTTTTCTGGAAAAGTTCCATCTGGATTGTCCTCGTTGATTCGCCTTCGAGTCATCGATTTCTCGGCGAATAAGTTCTCGGGGAGTTTGGATTTCTTGAAGCAGTTTCCCAACTTGGAAACTCTCTCGATTGCCAACAATTACTTCACCGGGAAAATCCCACCTTCGATTCGTTCCTTCCGCAATCTTCGAGTCTTCAACTTCTCTGGAAATCGCTTTCTCGAAGCTGGTTCAGCCCCCATCGTGAAAGGCGTCGAGTTCTACTCAGCAACCGAAGTTCCCAAACGCTATAAGTTAGCTGAGAATTCCAGTACCAGTACGAGAGACAAGCAGCACAGGTTCGTCTTTTCTCTACTGTTTAAACTCGTCATCGCAGCTATAAAAGGTGGAAGCAAGGATAACGGCCCCTCGATCTTTGCTCCTAAATTAATAAAACGAGAGGATCTGGCTTTTCTAGAGAAAGACGATGCGTTTGCATCGCTGGAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAGGCCGAGTTACCAGAAAGAAGCGGGAAAATGTTTGCGATAAAGAAGATTACTCAACCCCCAAAGGAAGCGGCGGAGTTAGCTGACGAGGATAGCAGGTTAATGACCAAGAAAATGCGTCAGATTAAGTCAGAGATCAGAACTGTAGGTGAAATCCGGCATCGGAATCTGCTTCCTCTTGTGGCCCATGTCCCCCGTCCTGACTGCCACTACCTTGTCTACGAATTGATGAAGAATGGCAGTTTGCAAGATATGTTGAATCAGGTTTCGTTAGGAATGAGAGAACTAGATTGGCTTACTCGGCATAAGATTGCTCTTGGAGTGGCATCTGGGCTTGAATACCTTCACATGAATCATACCCCTCGTATAATTCACAGGGATCTCAAGCCTGCAAATGTTTTGCTCGACGACGACATGGAAGCTCGAATTGCTGATTTTGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATGACAGCTTCAAATGTTGCAGGTACTGTAGGATACATTGCACCAGAGTATCATCAGACCTTGAAGTTCACAGATAAGTGTGACATATATGGTTATGGGGTTCTCCTAGGTGTTCTGGTGATCGGGAAACTTCCATCCGATGAGTTCTTCCAGGACACAGATGAGATGAGTTTAGTTAAGTGGATGAAGAATGTTATGGCTTCGGATAATCCTAGGAGAGCCATTGATCCGAAGCTCCAGGGAAATGGCTGGGAGGAGCAAATGCTCTTGGCACTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGATGTCAGATGCATGCTGTCACAGATC 1521 46.29 ITRLVFNAKGLAGSLSPAIGRLTELKELTVSNNRLVDQVPPQIVDCRKLEILDLQNNQFSGKVPSGLSSLIRLRVIDFSANKFSGSLDFLKQFPNLETLSIANNYFTGKIPPSIRSFRNLRVFNFSGNRFLEAGSAPIVKGVEFYSATEVPKRYKLAENSSTSTRDKQHRFVFSLLFKLVIAAIKGGSKDNGPSIFAPKLIKREDLAFLEKDDAFASLELIGKGGCGEVYKAELPERSGKMFAIKKITQPPKEAAELADEDSRLMTKKMRQIKSEIRTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSLGMRELDWLTRHKIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHMTASNVAGTVGYIAPEYHQTLKFTDKCDIYGYGVLLGVLVIGKLPSDEFFQDTDEMSLVKWMKNVMASDNPRRAIDPKLQGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQI 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 601331 603007 - MC06g0090 Mch6g0098 689545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0098 507 SUPERFAMILY L domain-like 2 134 - -
Mch6g0098 507 Gene3D Phosphorylase Kinase; domain 1 204 306 - -
Mch6g0098 507 Gene3D Transferase(Phosphotransferase) domain 1 307 507 - -
Mch6g0098 507 SUPERFAMILY Protein kinase-like (PK-like) 212 504 IPR011009 -
Mch6g0098 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0098 507 Gene3D Ribonuclease Inhibitor 1 160 IPR032675 -
Mch6g0098 507 Pfam Protein kinase domain 217 499 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0098 507 FunFam Leucine-rich repeat receptor-like protein kinase 307 507 - -
Mch6g0098 507 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 87 - -
Mch6g0098 507 ProSiteProfiles Protein kinase domain profile. 215 507 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0098 507 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 190 507 IPR051564 GO:0016020(PANTHER)
Mch6g0098 507 SMART serkin_6 215 507 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0098 507 Pfam Leucine Rich Repeat 48 70 IPR001611 GO:0005515(InterPro)
Mch6g0098 507 Pfam Leucine Rich Repeat 95 116 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0098 Mch-Chr6:601331 Mch1g1066 Mch-Chr1:13609815 9.65E-60 dispersed
Mch6g0098 Mch-Chr6:601331 Mch6g2847 Mch-Chr6:29699103 1.38E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77450 PF00069 Pkinase 1.00E-42 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0098 - - - 0.0