Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g0114 | ATGAGGAACTTCTCCCTTTTCCCTCCTCCACGACACATCGGTCATCCAACTTTTCGATTGATTTCTGGCCCTGTTTTTGAGTTCATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTGAATATGCGTCCACGGTGCTTGGACACACACGTGGCAGTTGGTTTTGCACTCGACATTGCTCGTGCTATGGAATGCCTGCACTCTCATGGGATCATTCACCGCGATCTGAAACCTGAGAACCTATTGTTGACTGCAGATCACAAAACAGTAAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCATTGACGGAGATGATGACTGCAGAGACGGGGACGTACCGTTGGATGGCTCCAGAGTTGTACAGCACCGTGACACTGAGGCAGGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCCATTGTGTTATGGGAACTGCTACATAACAAGTTGCCATTTGAAGGCATGTCTAATCTTCAGGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCTAGCGCGGAGAATCTCCCGGAGGAACTAGCCGATGTTCTAACATCGTGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATTATCCACATGTTACTCAATTACCTTTACACCATATCACCCCCCGAGCCCGTGATTCCTTACCGAGTTTTCACTTCTGAGAATGCGGTGTTTCCTCCCGAGTCTCCTGGAACAAGCTCGCTGATGGCAGTCCGTGATGATTCAGGGGACACCCCAAAGGCAAAAATGGAAAATAAGCCCAGAGGTTGTTTCTTCTGCTCCAATGACTGTTACTAA | 876 | 47.6 | MRNFSLFPPPRHIGHPTFRLISGPVFEFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTHVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELADVLTSCWQEDANARPNFTQIIHMLLNYLYTISPPEPVIPYRVFTSENAVFPPESPGTSSLMAVRDDSGDTPKAKMENKPRGCFFCSNDCY | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 665767 | 668356 | - | MC06g_new0020 | Mch6g0114 | 689561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g0114 | 291 | MobiDBLite | consensus disorder prediction | 255 | 275 | - | - | |
Mch6g0114 | 291 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 85 | 97 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | Gene3D | Transferase(Phosphotransferase) domain 1 | 18 | 232 | - | - | |
Mch6g0114 | 291 | Pfam | Protein tyrosine and serine/threonine kinase | 25 | 225 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | FunFam | serine/threonine-protein kinase HT1 | 46 | 245 | - | - | |
Mch6g0114 | 291 | CDD | STKc_MAP3K-like | 28 | 225 | - | - | |
Mch6g0114 | 291 | SMART | serkin_6 | 7 | 229 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | PRINTS | Tyrosine kinase catalytic domain signature | 79 | 97 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | PRINTS | Tyrosine kinase catalytic domain signature | 196 | 218 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | PRINTS | Tyrosine kinase catalytic domain signature | 41 | 54 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | PRINTS | Tyrosine kinase catalytic domain signature | 153 | 175 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | ProSiteProfiles | Protein kinase domain profile. | 1 | 226 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch6g0114 | 291 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 26 | 226 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Mch6g0114 | 291 | SUPERFAMILY | Protein kinase-like (PK-like) | 26 | 254 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g1998 | Mch-Chr5:19693486 | Mch6g0114 | Mch-Chr6:665767 | 3.86E-107 | dispersed | |
Mch6g0114 | Mch-Chr6:665767 | Mch8g2582 | Mch-Chr8:28960626 | 1.29E-56 | dispersed | |
Mch4g2191 | Mch-Chr4:23652879 | Mch6g0114 | Mch-Chr6:665767 | 1.40E-146 | wgd | |
Mch6g0114 | Mch-Chr6:665767 | Mch8g1464 | Mch-Chr8:10974363 | 2.20E-153 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77451 | PF07714 | PK_Tyr_Ser-Thr | 6.00E-44 | CL0016 | Mch | PK |
Pathway information
