Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0126 ATGGCATCATCAAGTTCATACAATTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCCGGTTGCATCTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAGAAGTTTGCCAATGTCCACAGAATCTTTGGGGCAAGCAATGTGACAAAGCTGCTCAACGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTCAACTCCCTTGCCTACGAGGCCGAGGCCCGAGTCCGAGACCCCGTCTACGGCTGCGTCGGGGCCATCTCGTTCCTCCAAAGGCAAGTCCAAAGGCTCCAAAAGGAACTTGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAGTGCAGGGGTCGGTCATGTGGTTCAGTCAATCCCCGGCCCTCGCCCGAGAAGCTACGAAGGGGCATCGAGCGGGTATTATAATCAACAGCTTTCTGCTTTCCCCATGGCTTATCCACTGCCTTGGAATGAAAGCTCTTCTGGAAATAACATGAATGAAGGAGGAGGAGGGGATGGCAGTATT 540 52.04 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHRIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPSAGVGHVVQSIPGPRPRSYEGASSGYYNQQLSAFPMAYPLPWNESSSGNNMNEGGGGDGSI 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 743224 743763 + MC06g0099 Mch6g0126 689573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0126 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 118 - -
Mch6g0126 180 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Mch6g0126 180 Coils Coil 89 116 - -
Mch6g0126 180 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0126 Mch-Chr6:743224 Mch9g1398 Mch-Chr9:16416749 8.35E-45 dispersed
Mch8g2579 Mch-Chr8:28931017 Mch6g0126 Mch-Chr6:743224 2.31E-57 transposed
Mch3g1425 Mch-Chr3:16660368 Mch6g0126 Mch-Chr6:743224 4.82E-59 wgd
Mch4g2198 Mch-Chr4:23699283 Mch6g0126 Mch-Chr6:743224 3.82E-63 wgd
Mch6g0126 Mch-Chr6:743224 Mch8g1482 Mch-Chr8:11184109 2.35E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43483 PF03195 LOB 2.60E-42 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0126 - - - 0.0