Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0144 ATGGGGCTACCTACAGCCTACCCTCACAATTCCATAGCCTACAGCCTATTCTTTGTCCGCCCTGAAATTCTTCCATTTTTTTTTCTCTCTCCGTCATTATTATCTATGGGGGATCTGTACGGACTCCATCTCGTCGCCGATTACTCTCATCAGTCGTCTTCAGCGCCGCCGTTGGAGAGCCTCGTCTTTCCGGCTAATTGCCAAACCTATTCAACTGCTTCTGCAGATTGTTCTCATCGACTTCCGGCATTTGGATCGGAACTGTTGGCTCCGGTTTCGTCGGCGGCCTCCGATGCTGCTTTAATGGTGGAGATTCAGAGAGCACGTGCTGTCGAGGAGGAATCTGCCGCTGCAATTAGAGCGAAAATTGCTTCTCATCCTCTTTATCCTAAGCTTCTCGAGGCGTTTGTCGACTGCCAAAAGGTCGGCGCACCGCCGGAGACGATTGTCAACATTCTTGACGAAAGCCAACGAAGAAATGACATCGGCGTTTCAACTTGCTTGGGTGCCGATCCCGAACTCGATGTGTTCATGGAAACGTACTGCGGGATACTGGCCAAGTACAAGTTGGATCTGTCCAAGCCCCTCGTTGAAGCATCTTCATTCCTCAACAACATGGAAATGCAATTAAACAGACTTTGTATCGGCGCCACCAGAGGCTACGTTTCCGATGAGGCTGGTGGTCCATCGGAAGAGGATCTGAGCGCCGGAGAATTGGAACTGCAGGAGTCTCTGCCGGCGAACGAAGATGGTGAGCTGAAGGATCGACTCCTACGCAAGTACAGTGGTCATATTAGCAGCTTAAAGCACGAATTCTCAAAAACGAAAAAGATGGGAAAGCTACCGAAAGAAGCAAGACACATCCTGCTCGACTGGTGGAACATCCATTCCAAATGGCCTTACCCCACTGAGATGGACAAAGTTGAGCTGGCCGAGTCGACGGGCCTAGACCAGAAGCAAATAAGTAACTGGTTCATAAACCAGAGAAAACGCCATTGGAAACCATCAGAAAATATGCAATTTGCTATTATGCATGGTCTTTACGGACCCCTTACGATGAATTGA 1065 49.3 MGLPTAYPHNSIAYSLFFVRPEILPFFFLSPSLLSMGDLYGLHLVADYSHQSSSAPPLESLVFPANCQTYSTASADCSHRLPAFGSELLAPVSSAASDAALMVEIQRARAVEEESAAAIRAKIASHPLYPKLLEAFVDCQKVGAPPETIVNILDESQRRNDIGVSTCLGADPELDVFMETYCGILAKYKLDLSKPLVEASSFLNNMEMQLNRLCIGATRGYVSDEAGGPSEEDLSAGELELQESLPANEDGELKDRLLRKYSGHISSLKHEFSKTKKMGKLPKEARHILLDWWNIHSKWPYPTEMDKVELAESTGLDQKQISNWFINQRKRHWKPSENMQFAIMHGLYGPLTMN 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 909398 915369 - MC06g0116 Mch6g0144 689591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0144 354 SMART ELK_2 252 273 IPR005539 GO:0003677(InterPro)
Mch6g0144 354 SUPERFAMILY Homeodomain-like 274 348 IPR009057 -
Mch6g0144 354 Gene3D - 278 338 - -
Mch6g0144 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 159 342 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch6g0144 354 Pfam KNOX1 domain 118 160 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch6g0144 354 ProSitePatterns 'Homeobox' domain signature. 310 333 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch6g0144 354 SMART KNOX2_2 164 215 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch6g0144 354 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677(InterPro)
Mch6g0144 354 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch6g0144 354 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677(InterPro)
Mch6g0144 354 SMART HOX_1 274 339 IPR001356 GO:0003677(InterPro)
Mch6g0144 354 Pfam KNOX2 domain 167 214 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch6g0144 354 Pfam ELK domain 252 273 IPR005539 GO:0003677(InterPro)
Mch6g0144 354 CDD homeodomain 276 336 IPR001356 GO:0003677(InterPro)
Mch6g0144 354 SMART KNOX1_2 117 162 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0144 Mch-Chr6:909398 Mch8g2772 Mch-Chr8:30795674 2.62E-69 dispersed
Mch11g0394 Mch-Chr11:2483045 Mch6g0144 Mch-Chr6:909398 6.11E-80 wgd
Mch6g0144 Mch-Chr6:909398 Mch8g0036 Mch-Chr8:217516 8.19E-101 wgd
Mch6g0144 Mch-Chr6:909398 Mch9g2260 Mch-Chr9:22932845 1.61E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43485 PF03791 KNOX2 3.50E-20 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0144 - - - 0.0