Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0156 ATGGCTGCTCGGGGCGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACGAGCGTAGTAATAGTTTCGATCAGTTGGAAGAGGTACCATACTTGTGTACATCCCTTACATATATGGATTGTGGTTGATTATACTACCGTCTTTGTTTTCCGCCTGCTGATGTTTGTTGACAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGCGGTCCTTTCAGTCCTTGCTCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGGCATTGGTACTTTGTGGTTTATAGAAGCTAACAAATGTCTTCTTGAGCAAGGCCAGAAATGGGGGTTCCTAATTTGGTTACTTTTTAGCTACTGTGCACTCATATGCATTGCTTGCATGTTTTTGGGGAAGTGGTTGACTCGTAGACAAGCACTCTTGTTACGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATTCGAGTACCAGATTGGGCTTTTGAAGCGGCAGGACAAGAAACTAGGGTAATGGGCCAAGATGCTGCTGCATACCACCCCGGACTTTACTTGACTGCAGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGCCTCCCATGTGCGCATAATTTTCATGTAGGATGTATTGATGAGTGGCTTCGACTGAATGTGAAATGCCCTCGATGCCGTTGCTCGGTCTTCCCAAATCTTGACCTCAGTGCTCTGTCCAATATTCGCACTGATACTGATAGGCCATCTGCAAGCGTTATTACGGCCAATCGATATATGAGATCTCAACCTTCCAGCCAAAGTTACCTGGTGAGATTGCAGGGTCTGCTTAGACCCGTTCGAACAGAGAACACTAGTGCACACAGTGATTTAGAGACTGGTAGTGCTTTGGAAGGTGCTGAGAATGGGTCTGCCCATGACCAAACTATTTCAGAACGGTCTCTGTCTTTGAGTCAGTCCACTTCACAACTCTAG 1122 46.52 MAARGVDFKWYDGFFLSMLATSVVIVSISWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIAVLSVLALLLYPFLWAWTGIGTLWFIEANKCLLEQGQKWGFLIWLLFSYCALICIACMFLGKWLTRRQALLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTAAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNIRTDTDRPSASVITANRYMRSQPSSQSYLVRLQGLLRPVRTENTSAHSDLETGSALEGAENGSAHDQTISERSLSLSQSTSQL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1047043 1051439 - MC06g0128 Mch6g0156 689603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0156 373 Pfam Ring finger domain 234 276 IPR001841 -
Mch6g0156 373 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Mch6g0156 373 SUPERFAMILY RING/U-box 216 284 - -
Mch6g0156 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Mch6g0156 373 MobiDBLite consensus disorder prediction 332 373 - -
Mch6g0156 373 SMART ring_2 235 275 IPR001841 -
Mch6g0156 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Mch6g0156 373 MobiDBLite consensus disorder prediction 351 373 - -
Mch6g0156 373 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0156 Mch-Chr6:1047043 Mch6g0661 Mch-Chr6:4500075 3.03E-09 dispersed
Mch10g0936 Mch-Chr10:6613210 Mch6g0156 Mch-Chr6:1047043 2.12E-06 transposed
Mch3g1454 Mch-Chr3:16857051 Mch6g0156 Mch-Chr6:1047043 7.88E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0156 K16284 - csv:101208939 697.197