Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g0178 | TCATCGATCTCCGAAGAAGAGGAGGAATTATTGTCGAAGCTCAAGAGTCCTGAAGTGTTTAAGCAAGAAGAAGGTGTTATTTCGCTGAGAAAGATTACGAAAGCCGACGAGAAAATTAGGGTTTCGCTTTGCACGCCTCGGATTCTTTTTGCCCTCCGCCTCTTGATAACATCGAGATACTCCACCGTACAAATCAACGCCGTCGCCTCTCTGGTGAATCTCTCCCTCGAAAAGCGCAACAAAGTGAAGATCGTGCGGTCAGGATTGGTTCCGAACTTAATCGACGTGCTAAAAGGGGGACATACCGAGTCGCAAGAACACGCCGCCGGCGCGCTCTTCAGCCTGGCGTTGGAGGACGAAAATCGGATGGCGATCGGAGTCCTCGGCGCGCTTCAGCCGCTCCTCTACGCGCTCCGATCGGAAAGCGAGCGGACTCGAGACGATTCCGCTCTGTGTCTGTACAACCTAACAATGATCCAGAGCAACCGAGTGAAGCTCGTGAAACTCGGCGCCGCGACAACTCTACTTTCCATGGTGAAATCGGGAAACTCGGTGGACCGGCTGCTGCTGATTCTCTGCAACATCGCCGTGTGCCCGGAGGGGAGGTCGGCAATGCTGGACGCCGACGCCGTCGGGTGCTTGGTGGAGATGCTGAGGACGAAGGAGGTGAACTCCGAGTCGACTCGCGAGAACTGCGTGGCGGCATTGTACGCGCTCAGCTTCGGAAGTATGAGATTCAGAGGACTGGCGAAAGAAGCTAGGGCAATGGAGGTGCTGCGAGAGATTGTGGACGGAGGAAGCGAGAGGGCGAGGGAGAAGGCGAAGATGATTTTGCAGAGGATGAAGGGAAGATTCGACGGAGAC | 864 | 55.21 | SSISEEEEELLSKLKSPEVFKQEEGVISLRKITKADEKIRVSLCTPRILFALRLLITSRYSTVQINAVASLVNLSLEKRNKVKIVRSGLVPNLIDVLKGGHTESQEHAAGALFSLALEDENRMAIGVLGALQPLLYALRSESERTRDDSALCLYNLTMIQSNRVKLVKLGAATTLLSMVKSGNSVDRLLLILCNIAVCPEGRSAMLDADAVGCLVEMLRTKEVNSESTRENCVAALYALSFGSMRFRGLAKEARAMEVLREIVDGGSERAREKAKMILQRMKGRFDGD | 288 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1199455 | 1200318 | + | MC06g0147 | Mch6g0178 | 689625 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g0178 | 288 | PANTHER | U BOX DOMAIN-CONTAINING | 5 | 281 | - | - | |
| Mch6g0178 | 288 | SMART | arm_5 | 198 | 241 | IPR000225 | GO:0005515(InterPro) | |
| Mch6g0178 | 288 | SMART | arm_5 | 118 | 158 | IPR000225 | GO:0005515(InterPro) | |
| Mch6g0178 | 288 | SMART | arm_5 | 77 | 117 | IPR000225 | GO:0005515(InterPro) | |
| Mch6g0178 | 288 | SUPERFAMILY | ARM repeat | 9 | 281 | IPR016024 | - | |
| Mch6g0178 | 288 | Gene3D | - | 188 | 284 | IPR011989 | - | |
| Mch6g0178 | 288 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 88 | 125 | IPR000225 | GO:0005515(InterPro) | |
| Mch6g0178 | 288 | FunFam | RING-type E3 ubiquitin transferase | 5 | 281 | - | - | |
| Mch6g0178 | 288 | Gene3D | - | 6 | 187 | IPR011989 | - | |
| Mch6g0178 | 288 | Pfam | Armadillo/beta-catenin-like repeat | 119 | 157 | IPR000225 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g1473 | Mch-Chr3:16955375 | Mch6g0178 | Mch-Chr6:1199455 | 1.52E-62 | wgd | |
| Mch4g2245 | Mch-Chr4:23988548 | Mch6g0178 | Mch-Chr6:1199455 | 3.03E-69 | wgd |
Pathway information