Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0195 ATGGATCCTCCACTTGTAAATGAATCGTCCTTCTCCGCTGCGAACCCATCTGCCTACAGCTTGGCCGCGATTTGGCCTTTCGTCGGGGAGCAAGCCGGAAGTGCATTGGGGCTCCGGATGGGTAGTTTGGGTCACAATCTTGGTGGGTTTCTCGAGACTTCCACCAATCGCGACGGGTCAATGGAGGAATCGACGGTGACGGAGCAGAGTGTCGGCGGTGGGAGGAAGAGGAAGGACGTGAGCTCGGAGGACGAGTCTTCCAAAATGGTTTCCACCAGCAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTATTGGAATCCAGAGATGAAAATGGTGGTTTAAAAGCTGAAGTAGAACCTATCTCGGCGGATAGTAAAAAACCGATCGATCAAAGCCCGAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGTCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGGATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTCGATGAGATAATAAATTATATCCAATCATTGCAACGGCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAGCTCTGGCATTGAAGGTTTTACTGTAAAAAATATTGTCAATCAACCATACGATACAGCAGGAATATTATATGGTTCACAAGCAGCAAGAGAATATACTCAAGGTGCACAACCTGAATGGTTACATATGCAGATTGGTGGAAGTTTTGAAAGAACATCTTAG 837 45.28 MDPPLVNESSFSAANPSAYSLAAIWPFVGEQAGSALGLRMGSLGHNLGGFLETSTNRDGSMEESTVTEQSVGGGRKRKDVSSEDESSKMVSTSSANQLSNSNGKRMKVLESRDENGGLKAEVEPISADSKKPIDQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNISSGIEGFTVKNIVNQPYDTAGILYGSQAAREYTQGAQPEWLHMQIGGSFERTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1306086 1311027 - MC06g0163 Mch6g0195 689642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0195 278 SMART finulus 161 211 IPR011598 GO:0046983(InterPro)
Mch6g0195 278 Pfam Helix-loop-helix DNA-binding domain 159 206 IPR011598 GO:0046983(InterPro)
Mch6g0195 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 205 IPR011598 GO:0046983(InterPro)
Mch6g0195 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 63 232 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch6g0195 278 MobiDBLite consensus disorder prediction 106 145 - -
Mch6g0195 278 Coils Coil 202 222 - -
Mch6g0195 278 MobiDBLite consensus disorder prediction 86 105 - -
Mch6g0195 278 MobiDBLite consensus disorder prediction 51 145 - -
Mch6g0195 278 CDD bHLH_AtBPE_like 145 227 - -
Mch6g0195 278 MobiDBLite consensus disorder prediction 51 71 - -
Mch6g0195 278 FunFam Basic helix-loop-helix transcription factor 152 224 - -
Mch6g0195 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 224 IPR036638 GO:0046983(InterPro)
Mch6g0195 278 Gene3D - 152 227 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0195 Mch-Chr6:1306086 Mch9g1063 Mch-Chr9:9814014 2.55E-41 dispersed
Mch8g1988 Mch-Chr8:22052118 Mch6g0195 Mch-Chr6:1306086 1.40E-75 transposed
Mch11g0358 Mch-Chr11:2200117 Mch6g0195 Mch-Chr6:1306086 8.06E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43492 PF00010 HLH 2.20E-08 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0195 - - - 0.0