Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g0207 | AGCTCTTCATTTTCTTTGAATTATGGTTCAGAGACAAAGGATGATGGAAGAAAAGAAAGACGACGATGGAGATACAGCGGAGATCGATTCGAACACTTTTCTATAACGGGGTGGTGTCATAAGAGGAAAATGGGAGACAAAGATGAGAAGCCTGAGGTTTTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGTAAAGAGGGTCTTACCACAGCGGCTGCTGAGGAACGACTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAAATCTTGAAGTTTTTGGGGTTTATGTGGAATCCCCTCTCATGGGTAATGGAAGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGGGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTATCTCCCTGTTGCTTATCAACTCAACCATCAGTTTTATTGAGGAAAACAACGCTGGTAATGCTGCCGCTGCTCTAATGGCTAGTTTAGCTCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGTGTGCAAGATGCTTCAGTTTTAGTTCCTGGTGATGTTATAAGCATCAAACTTGGGGATATAATTCCAGCTGATGCTCGTCTTCTAGAGGGGGATCCATTGAAAATTGATCAGTCTGCTCTTACAGGCGAGTCCCTTCCTGTTACGAAAGGTCCTGGGGATGGGATATACTCTGGTTCCACTTGCAAACAAGGGGAAATTGAAGCAGTGGTCATCGCCACTGGTGTGCATACTTTCTTTGGGAAGGCTGCTCACCTTGTTGACACCACTAATCAAGTGGGCCACTTCCAAAAGGTTTTAACTGCAATAGGGAACTTCTGCATATGTTCAATTGCTGTGGGGATGATTACAGAAATTATTGTCATGTACCCAATTCAAGATCGGGAATATCGTCCTGGAATCGATAATCTTCTCGTGCTTCTGATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTAACAATGGCTATTGGCTCCCATAGGTTATCCCAGCAGGGTGCTATCACTAAGAGGATGACTGCAATTGAAGAGATGGCAGGTATGGATGTGCTTTGCAGTGACAAGACTGGAACTCTGACATTAAACAAGCTAACCGTTGACAAAAATCTTGTTGAGGTTTTTGCTAAAGGAGTGGATGTGGATACTGTGGTTTTAATGGCAGCCCGGGCATCAAGAACAGAGAATCAAGATGCTATTGATACTGCTATTGTTGGGATGCTTGCTGATCCGAAAGAGGCTCGTGCTGGTATCCAAGAAGTACATTTCCTTCCTTTTAACCCTACTGATAAGCGGACTGCATTGACTTACATAGACCATGAAGGTAAAATGCATAGGGTCAGCAAAGGTGCACCAGAGCAGATTCTGAACCTTGCACACAATAAATCGGAAATTGAGCGGAAAGTTCATGCTGTGATTGATAAGTTTGCGGAGCGAGGTTTACGTTCTCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTAGGAAAGAGAGTGCTGGAGGGCCATGGCAGTTTATTGGCCTTCTACCACTGTTCGACCCACCAAGACATGATAGTGCGGAGACTATAAGGAGGGCCTTAAATCTTGGAGTGAACGTGAAGATGATTACTGGCGACCAGCTGGCGATAGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCTTCTGCTTTATTAGGTCAGGACAAGGATGAGTCCATTGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCAAGGAAACATATCTGTGGGATGACTGGTGATGGAGTAAATGATGCTCCAGCCCTTAAGAAAGCAGACATAGGGATAGCTGTTGCTGATGCTACTGATGCTGCTCGTAGTGCTTCAGACATAGTCCTTACGGAACCTGGTCTCAGTGTTATCATTAGTGCTGTTTTGACCAGCCGAGCAATCTTCCAAAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTAGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCTTTTATGGTGCTCATCATTGCCATTCTCAACGATGGTACCATAATGACAATATCGAAGGATAGAGTGAAGCCATCTCCTTTGCCTGATAGCTGGAAGCTGGCGGAAATTTTCACAACTGGCATCATACTCGGAGGCTATTTGGCAATGATGACTGTTATCTTCTTTTGGGTAGCCTATAAAACAGACTTCTTTCCACGAGTTTTTGGGGTAGCAACTCTCGAGAAAACTGCTCACGATGACATTAGGAAACTTGCCTCAGCAGTGTATTTGCAAGTAAGCACTATTAGTCAGGCTCTCATATTTGTTACACGCTCGCGAAGTTGGTCGTACGTGGAACGTCCTGGGTTATTACTGGTCGTGGCTTTCCTGGTTGCACAGCTGATTGCTACTTTAATTGCGGTTTATGCAAATTGGAAGTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCCGGTGTTATTTGGCTATACAACATCATCTTTTACATCCCACTAGATCTCATAAAGTTCTTTACACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCGTTTACGAGGCAAAAGGACTTCGGGAAGGAACAGCGGGAGCTACAATGGGCTCATGCACAAAGAACATTACATGGACTGCAAGCGCCGGATGCCAAAATGTTCCATGACCGAACTCACTTCACCGAGCTCAATCAGATGGCCGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTACACACTCTGAAAGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGACTTGACATCGACACGATTCAGCAAGCTTACACTGTTTGA | 3009 | 44.8 | SSSFSLNYGSETKDDGRKERRRWRYSGDRFEHFSITGWCHKRKMGDKDEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIISLLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDVISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWVAYKTDFFPRVFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRSWSYVERPGLLLVVAFLVAQLIATLIAVYANWKFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFTRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV | 1002 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1390538 | 1399373 | + | MC06g0173 | Mch6g0207 | 689654 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g0207 | 1002 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 379 | 385 | IPR018303 | - | |
| Mch6g0207 | 1002 | SUPERFAMILY | Calcium ATPase, transduction domain A | 180 | 277 | IPR008250 | - | |
| Mch6g0207 | 1002 | Gene3D | - | 180 | 264 | - | - | |
| Mch6g0207 | 1002 | Gene3D | - | 374 | 673 | IPR023214 | - | |
| Mch6g0207 | 1002 | Pfam | Cation transporter/ATPase, N-terminus | 66 | 129 | IPR004014 | - | |
| Mch6g0207 | 1002 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 65 | 950 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Mch6g0207 | 1002 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 63 | 899 | IPR023298 | - | |
| Mch6g0207 | 1002 | SFLD | C1.7: P-type atpase like | 359 | 687 | - | - | |
| Mch6g0207 | 1002 | Pfam | haloacid dehalogenase-like hydrolase | 373 | 650 | - | - | |
| Mch6g0207 | 1002 | CDD | P-type_ATPase_H | 82 | 893 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Mch6g0207 | 1002 | FunFam | Plasma membrane ATPase | 530 | 684 | - | - | |
| Mch6g0207 | 1002 | Gene3D | - | 389 | 536 | IPR023299 | GO:0000166(InterPro) | |
| Mch6g0207 | 1002 | SFLD | p-type atpase | 359 | 687 | IPR044492 | - | |
| Mch6g0207 | 1002 | SUPERFAMILY | HAD-like | 373 | 683 | IPR036412 | - | |
| Mch6g0207 | 1002 | FunFam | Plasma membrane ATPase | 389 | 536 | - | - | |
| Mch6g0207 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 493 | 511 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0207 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 608 | 624 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0207 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 812 | 833 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0207 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 636 | 652 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0207 | 1002 | PRINTS | H+-transporting ATPase (proton pump) signature | 667 | 692 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0207 | 1002 | Gene3D | - | 142 | 867 | - | - | |
| Mch6g0207 | 1002 | Pfam | E1-E2 ATPase | 178 | 356 | - | - | |
| Mch6g0207 | 1002 | FunFam | ATPase 4 plasma membrane-type | 621 | 867 | - | - | |
| Mch6g0207 | 1002 | FunFam | Plasma membrane ATPase | 180 | 264 | - | - | |
| Mch6g0207 | 1002 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 82 | 858 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Mch6g0207 | 1002 | Gene3D | - | 951 | 1002 | - | - | |
| Mch6g0207 | 1002 | Coils | Coil | 953 | 973 | - | - | |
| Mch6g0207 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 227 | 241 | - | - | |
| Mch6g0207 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 531 | 542 | - | - | |
| Mch6g0207 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 553 | 563 | - | - | |
| Mch6g0207 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 377 | 391 | - | - | |
| Mch6g0207 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 636 | 655 | - | - | |
| Mch6g0207 | 1002 | PRINTS | P-type cation-transporting ATPase superfamily signature | 659 | 671 | - | - | |
| Mch6g0207 | 1002 | NCBIfam | HAD-IC family P-type ATPase | 611 | 724 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0207 | 1002 | NCBIfam | HAD-IC family P-type ATPase | 149 | 584 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0207 | 1002 | SMART | Cation_ATPase_N_a_2 | 63 | 135 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g0207 | Mch-Chr6:1390538 | Mch8g0384 | Mch-Chr8:2734768 | 0 | dispersed | |
| Mch3g1513 | Mch-Chr3:17291607 | Mch6g0207 | Mch-Chr6:1390538 | 0 | wgd | |
| Mch4g2282 | Mch-Chr4:24302790 | Mch6g0207 | Mch-Chr6:1390538 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch6g0207 | K01535 | - | csv:101217264 | 1790.01 |