Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0215 CATGTGCAGGAAGAAAGAATAAAAATGGCGAAAGCAGAAATGAGGGAAGTGAAGGAAGAAAACGAGAGGCTAAAGAAGTGTTTGGATGAGATAGTGAAGGATTACGAGAGGCTGAAAAGGCAGTTCCAGGAGATTAATCAGAATCAGAATCAGAGATCAGAAGGCAAACAAACCAGTGCAAGTACCATCATCCATGATCATGAGGTTGAAGAAGTTGACGACATGGTTTCATTGACATTGGGAAGATTCTCGTCAACATCAACCCATCACAACAACAACAACATAATATCCTCACAGAGATCATCAAACTTGTTATTGGATCACAAAAGGGTTTCATTGACTGGTAGCTCCGAAAGAAATCAAACCCCATCAAATGATCTCGTCGTTCAAACTCCGCCCGACAGCGAGCCTAAAGAGGAAGACGCTGGACAGACTTGGCCCCCGAGTAAAGCCTTGAAGACCACTTTGCCACCGCCGCCAGCAGAAGACGAAGTTTCTCAACAGAATCCTCCCAAGAAAGCTAGGGTTTGTGTCAGAGCTCGATGCGATACTCCAACGCTGAACGATGGTTGTCAATGGAGGAAATATGGACAGAAAATTGCAAAAGGAAATCCTTGCCCCAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCTGTTAGGAAACAAGTACAAAGGAGTATTGATGATATTTCTATATTAATCACCACCTATGAAGGGACTCACAACCACCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCTGCGGCGGCCTCGATGCTCCTCTCGGGCCCTTCCTCCTCGTCCACCTCCCGGCCCGGCATCGGCCTTAACCCGCCGTCGGTTGCCAATCACTTGTATCTCTCTAACAACTCAATTAACAATCCAAAGCAATTGTACTTCCCAAACTCTTCACTCCTCTCTTCTAATTCTCTCAACCATCCCACAATCACCTTAGACCTCACTTCATCTTCAACTTCAACTTCTTCATCTCCTTTCCATAAGATCCCTTCGACTTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGCTCTTCCCAATCCAACTTAATGTCTTGGAACAATGGTGGCCTAATTGTCAATAACAATCAACCTTATAATCTAACCAAGAATAATAGTGCAATAGGAATGTCATCATCAGACCTTACCAAACAACTGCCTCTCTCTAGTAACATCTACCAAGCCTGCCTTCAGCACATGAACAAAACTTCAACTCCGGCACCACCACCGGAGACGATAGCAGCAGCAACGAAGGTAATTACGTCGGACCCGAACTTCCAGTCCGCGTTGGTGGCTGCCATCAGCTCGATCATCGGCGGGGAAAACGGCGGGGAGATGAGTAGCTATGTGTGTGCATCATCAGCAAGTTTGTTGAGCAAAACGCCTTCAGGGACAAGTTCTCAACAGGGAAGTATGGGGTTTCAGCCACCAGCTGCTGTTTCCAATTCCAAGACTCCTTCTTCATCTCCG 1506 46.61 HVQEERIKMAKAEMREVKEENERLKKCLDEIVKDYERLKRQFQEINQNQNQRSEGKQTSASTIIHDHEVEEVDDMVSLTLGRFSSTSTHHNNNNIISSQRSSNLLLDHKRVSLTGSSERNQTPSNDLVVQTPPDSEPKEEDAGQTWPPSKALKTTLPPPPAEDEVSQQNPPKKARVCVRARCDTPTLNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSIDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSSTSRPGIGLNPPSVANHLYLSNNSINNPKQLYFPNSSLLSSNSLNHPTITLDLTSSSTSTSSSPFHKIPSTYPPKYPFTSLDFGSSQSNLMSWNNGGLIVNNNQPYNLTKNNSAIGMSSSDLTKQLPLSSNIYQACLQHMNKTSTPAPPPETIAAATKVITSDPNFQSALVAAISSIIGGENGGEMSSYVCASSASLLSKTPSGTSSQQGSMGFQPPAAVSNSKTPSSSP 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1447524 1450239 + MC06g0179 Mch6g0215 689662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0215 502 ProSiteProfiles WRKY domain profile. 182 248 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0215 502 Coils Coil 2 52 - -
Mch6g0215 502 MobiDBLite consensus disorder prediction 470 502 - -
Mch6g0215 502 Gene3D WRKY domain 172 249 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0215 502 MobiDBLite consensus disorder prediction 114 173 - -
Mch6g0215 502 Pfam WRKY DNA -binding domain 188 246 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0215 502 MobiDBLite consensus disorder prediction 114 131 - -
Mch6g0215 502 SMART WRKY_cls 187 247 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0215 502 FunFam probable WRKY transcription factor 31 172 249 - -
Mch6g0215 502 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 455 IPR044810 GO:0003700(InterPro)
Mch6g0215 502 SUPERFAMILY WRKY DNA-binding domain 180 248 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1738 Mch-Chr1:17926845 Mch6g0215 Mch-Chr6:1447524 2.08E-43 dispersed
Mch4g0252 Mch-Chr4:1653792 Mch6g0215 Mch-Chr6:1447524 1.87E-47 dispersed
Mch6g0215 Mch-Chr6:1447524 Mch8g1065 Mch-Chr8:7514298 1.79E-24 dispersed
Mch10g0518 Mch-Chr10:3383563 Mch6g0215 Mch-Chr6:1447524 5.43E-43 transposed
Mch3g1525 Mch-Chr3:17354615 Mch6g0215 Mch-Chr6:1447524 2.89E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43495 PF03106 WRKY 9.40E-24 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0215 - - - 0.0