Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0234 GTTTCATGTGCATGTATAATGTTAATTTTGTGTAGAAGCTACAATTCTGGATTGGATTGGGCGCAGTGCAATTTTGGGTTGCAAGAGAGCGTTTTCGACGTTGTTCCTTTGTTTGAGAGCTGCCCGGTTGAGGATATTGAGCCCATTAACACCTACATATCAGAAGATGTTCTGCGTGGTTATGGAGATGGGGTTGGGATTTGGGGCGAAATGGAGGCTGGATTTGGGTTTCAGAAGCAGCCATTACTGCTGGAGGGATCAGGTGGATTATCAGAAAATGGAGAGAGATCAAAAGAGAGGGTTATGAGAGGGAGAAGAAAGTGCAGAGAAAGCAGCAATAATGGTAGTAGTTCATCAAAAATGTTGTCGAGAAAAACAATATCTCAATACTTCTACATGCCTATTACTCAGGCGGCCAAAGAGCTGAATGTGGGACTCACTCTCTTGAAGAAGAGATGTAGAGAATTGGGTATTAGAAGATGGCCTCATAGGAAGTTGATGAGCCTCCAAACCCTAATCAAGAATGTTAAGGCAATGCAGGAACTTCGAGAGGGGGAGGAAGAGCGAAATGGAGTGAAGTTGAGGAATGTATTGGAGATATTAGAGGAAGAGAAGAAGGTGATGGAGGAGAGGCCAGACTTGCAGCTGGAGGACAACACTAAGAGGCTTAGACAAGCCTGTTTCAAGGCCAACTACAAAAAAAGGAAGCTCTCAGGTATGAGAATGACCAACAATGACTCCCAGTGTTTCTCCGGACCCGCTGCTGCGGCCCGAGGGATGTTCCGAGGTGAGGAGGAAGAGGATGAAGAAGAAGACGAGGACGAAGAAATGAAATATTTGTTGTCGGATTGCTCGTTTTCGTCGAGTAGCTGCTGTAGTATGATG 885 45.31 VSCACIMLILCRSYNSGLDWAQCNFGLQESVFDVVPLFESCPVEDIEPINTYISEDVLRGYGDGVGIWGEMEAGFGFQKQPLLLEGSGGLSENGERSKERVMRGRRKCRESSNNGSSSSKMLSRKTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKAMQELREGEEERNGVKLRNVLEILEEEKKVMEERPDLQLEDNTKRLRQACFKANYKKRKLSGMRMTNNDSQCFSGPAAAARGMFRGEEEEDEEEDEDEEMKYLLSDCSFSSSSCCSMM 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1562023 1563239 + MC06g0195 Mch6g0234 689681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0234 295 PANTHER PROTEIN RKD4 108 249 IPR044607 GO:0003700(InterPro)
Mch6g0234 295 MobiDBLite consensus disorder prediction 92 110 - -
Mch6g0234 295 Coils Coil 169 189 - -
Mch6g0234 295 Coils Coil 191 211 - -
Mch6g0234 295 MobiDBLite consensus disorder prediction 88 121 - -
Mch6g0234 295 Pfam RWP-RK domain 122 169 IPR003035 -
Mch6g0234 295 ProSiteProfiles RWP-RK domain profile. 109 189 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0234 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0052 Mch-Chr10:288269 Mch6g0234 Mch-Chr6:1562023 2.74E-33 dispersed
Mch1g1650 Mch-Chr1:17412133 Mch6g0234 Mch-Chr6:1562023 1.38E-19 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0234 . 105 240 AtRKD Transcription Factor Family AT1G18790 68.4 1.8e-42 169.9
Mch1g1650 . 3 175 AtRKD Transcription Factor Family AT4G35590 50.3 2.7e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43500 PF02042 RWP-RK 1.90E-21 No_clan Mch TF