Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0241 ATGGCAACCGTCACGACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCTCCCGGTCGAGGTTCCTATCTGGGTCTTCGAGTAAACTCCACCGCGAGCTGTCGGTTAAGCCCGTGGCCGCTTTGTCATCTTCATCCTTGAAGGTGGAAGCAAAGAAGGGAGAGTGGTTGCCAGGTCTGCCGTCTCCGGGATACCTGAATGGCAGTCTTCCGGGGGACAATGGATTCGATCCACTGGGGCTGGCGGAGGACCCAGAGAACTTGCGGTGGTTCGTGCAGGCGGAGCTGGTGAACGGGCGGTGGGCGATGCTGGGGGTGGCCGGAATGCTGCTGCCGGAGGTGTTTACGAAGATCGGAATCATAAACGCGCCGCAATGGTACGACGCCGGAAAAGCAGAGTACTTCGCGTCGTCGTCGACCCTGTTCGTGATCGAGTTCATTCTGTTCCATTACGTGGAAATCAGGAGATGGCAGGACATCAAAAACCCAGGCAGCGTCAACCAAGACCCCATTTTCAAGCAGTACAGTTTGCCCCCAAACGAAGTGGGCTACCCAGGCGGCATTTTCAACCCTCTCAACTTCGCTCCCACTCTCGAGGCCAAGGAGAAGGAGATCGCCAACGGGAGACTGGCAATGTTGGCGTTCTTGGGGTTCATAGTTCAACATAATGTGACTGGAAAGGGGCCGTTTGAGAACCTTTTGCAGCACATTTCAGACCCGTGGCACAACACCATTGTCCAGACCTTCGGTGGGAATTAA 759 56.26 MATVTTQASAAVFRPCASRSRFLSGSSSKLHRELSVKPVAALSSSSLKVEAKKGEWLPGLPSPGYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1588441 1590170 - MC06g0199 Mch6g0241 689688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0241 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Mch6g0241 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Mch6g0241 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Mch6g0241 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Mch6g0241 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0241 Mch-Chr6:1588441 Mch8g0688 Mch-Chr8:4936327 3.33E-67 dispersed
Mch4g2062 Mch-Chr4:22844328 Mch6g0241 Mch-Chr6:1588441 7.35E-48 transposed
Mch6g0991 Mch-Chr6:6967593 Mch6g0241 Mch-Chr6:1588441 5.13E-67 transposed
Mch6g1282 Mch-Chr6:10317379 Mch6g0241 Mch-Chr6:1588441 6.93E-50 transposed
Mch9g2370 Mch-Chr9:23612786 Mch6g0241 Mch-Chr6:1588441 5.08E-76 transposed
Mch3g1735 Mch-Chr3:18781206 Mch6g0241 Mch-Chr6:1588441 3.37E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0241 K08910 - csv:101222701 489.574