Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0242 ATGGCGTTTCCTGGACTTCTCTTGGTGGGTTTTCTTCTCTCTTTGGGATGTAATTTGGTCCATGGCGAAGAACGCTGGATGGATGCCCACGCCACGTTCTACGGTGGGGGTGACGCCTCTGGCACAATGGGCGGGGCTTGTGGATATGGGAACCTGTACAGCCAGGGATATGGGACGAACACAGCGGCTTTAAGCACTGCATTGTTCAACAATGGAGAGAGCTGTGGAGCTTGCTTTGAAATCAAGTGCGTGAACGATCCAGAATGGTGTGTTTCCAACTCTATTGTGGTCACTGCCACAAACTTCTGCCCACCAAATAACGCACTCCCCAACGACGCCGGCGGGTGGTGCAACCCTCCCCTGCACCACTTCGATCTCTCCCAGCCCGTCTTCCAGCAAATCGCTGGTTACAAAGCCGGCATTGTTCCGGTGGCCTACAAAAGGATTTCTTGCGAAAAGAAAGGAGGGATGAGATTCACAATAAACGGGCATTCGTACTTCAATCTAGTGCTGATAACGAATGTGGGGGGCGCCGGCGATGTTCAGGCGGCGTGGATAAAAGGGTCGAAGACGGGGTGGGAGGCGATGTCCAGGAACTGGGGCCAGAACTGGCAGAGCAATTCTAATCTGGACGGCCAAAGCCTGTCGTTCAAAGTGACCACCGGGGACGGGCGGACGGTGATCTCCAACGACGTGGCGCCAGCTGGGTGGAGGTTCGGCCAGACTTTTAGT 732 54.92 MAFPGLLLVGFLLSLGCNLVHGEERWMDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGESCGACFEIKCVNDPEWCVSNSIVVTATNFCPPNNALPNDAGGWCNPPLHHFDLSQPVFQQIAGYKAGIVPVAYKRISCEKKGGMRFTINGHSYFNLVLITNVGGAGDVQAAWIKGSKTGWEAMSRNWGQNWQSNSNLDGQSLSFKVTTGDGRTVISNDVAPAGWRFGQTFS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1592357 1594068 - MC06g0200 Mch6g0242 689689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0242 244 Gene3D - 156 244 IPR036749 -
Mch6g0242 244 PANTHER EXPANSIN-A15 23 243 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 FunFam Expansin 16 152 - -
Mch6g0242 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Mch6g0242 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 244 IPR007117 -
Mch6g0242 244 SUPERFAMILY PHL pollen allergen 153 243 IPR036749 -
Mch6g0242 244 CDD DPBB_EXPA_N 25 151 - -
Mch6g0242 244 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 PRINTS Expansin signature 231 244 IPR002963 GO:0009664(InterPro)
Mch6g0242 244 SMART dpbb_1 61 146 IPR007112 -
Mch6g0242 244 Gene3D - 17 152 IPR036908 -
Mch6g0242 244 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Mch6g0242 244 FunFam Expansin 156 244 - -
Mch6g0242 244 PRINTS Expansin/Lol pI family signature 231 244 IPR007118 GO:0005576(InterPro)
Mch6g0242 244 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Mch6g0242 244 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Mch6g0242 244 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Mch6g0242 244 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Mch6g0242 244 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Mch6g0242 244 Pfam Lytic transglycolase 61 146 IPR009009 -
Mch6g0242 244 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0027 Mch-Chr5:235024 Mch6g0242 Mch-Chr6:1592357 5.89E-30 dispersed
Mch6g0242 Mch-Chr6:1592357 Mch8g2460 Mch-Chr8:27539492 9.11E-132 dispersed
Mch10g1100 Mch-Chr10:8120331 Mch6g0242 Mch-Chr6:1592357 2.58E-86 transposed
Mch3g1733 Mch-Chr3:18778987 Mch6g0242 Mch-Chr6:1592357 8.59E-118 wgd
Mch4g2319 Mch-Chr4:24548151 Mch6g0242 Mch-Chr6:1592357 9.70E-126 wgd
Mch6g0242 Mch-Chr6:1592357 Mch9g2116 Mch-Chr9:22063783 3.79E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0242 - - - 0.0