Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0258 ATGGGTTTCAACTTCAGAGAAGGTGATAGGCAAAGCCAAATTTCTAATATATTGACTCAGTATGACATGACAGTTTTGGATTATCCTGGGCATTATGAGGGATGTCCTTTATTGTCATTGGAGATGATCTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGATGGTCAACAGAATGTGGTACTGATGCACTGTGAAAGAGGAGGCTGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAACCCTCAACCTTCCCACCTGAGATATCTTCAATACATTTCCAGGAGAAATTTGGATTCTGATTGGCCTCCATCTGATACACCTCTGGTTTTGGATTGTTTAATAATTAGAGTTATACCTCTCTTTGATGGGGGAAAAGGATGCAGGCATGTTGTGCATGTCTATGGTCAAGACCCCTCAGCTCCGGCCAACAGAACTTTGAAGCTTTTATTTTCGACTCCAATCAATAAGAAACATATCCGCAGCTACTTACAGGCAGAGTGTATGCTGGTGAAAGTTGACATTCGTTGCCGCGTGCAAGGGAATGTGGTTGTTGAATGCATCCATTTGGATGAAGATTTAGTAGGTGAGGAGATGGTATTTAGATTTATGTTTCACACAGCATTTGTTAGATCAAACATTATGATGCTGAGCTGTGATGAAGTTGATGTTGCATGGGATGCAAGGGACCAGTTCTCTAAGGACTTCAGAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAATCTCGCCACAGCCCTTGACGATGAAGATGAATATGAAACAGGAGCTGCTTCTTTTGAAGAGTTTATTGAGGTTGAAGAGATCTTCAACAATGTAATGGATGGGCAGGAAGCCAAAGGGTCCAATGATCCTCCTGCATTCCAAGATTGTGCATCTGCCGATGGAAATTTTAAGCATGATAAGAAATCCGATTTTGATTCAGTGAAGGACATTACTGTGGATGATGTGAAATACAAACTGGATGAAAATATATACTCTGAGCTTAATGCAGTTAAGAACACTGTTGTGGAAGAGGACATGGATCCTCCATTCAGTAGACAACCACCACCATGGCTGCAAATCTATTCGTCCGTTTCTACTGTAATGGTGGCTGGTTCTATTCCACCTCCACCACCCCCACCTCCACCAATGGTGCATAAGGCATTTCCCTCACCATCTCTAGTGAGAGGAACACCACCTCCACCTCCTTCAAAGCATGGAGTACCACCTCCGCCACCACCTCCAAAAGAGTGCTTGTATTTTGGTCAATTGAAACACCAAAAAAGAACATCCATAAGTCAAAAGTACAAACTATAA 1422 42.9 MGFNFREGDRQSQISNILTQYDMTVLDYPGHYEGCPLLSLEMIFLRSSESWLSLDGQQNVVLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRNLDSDWPPSDTPLVLDCLIIRVIPLFDGGKGCRHVVHVYGQDPSAPANRTLKLLFSTPINKKHIRSYLQAECMLVKVDIRCRVQGNVVVECIHLDEDLVGEEMVFRFMFHTAFVRSNIMMLSCDEVDVAWDARDQFSKDFRVEALFLDADAVVPNLATALDDEDEYETGAASFEEFIEVEEIFNNVMDGQEAKGSNDPPAFQDCASADGNFKHDKKSDFDSVKDITVDDVKYKLDENIYSELNAVKNTVVEEDMDPPFSRQPPPWLQIYSSVSTVMVAGSIPPPPPPPPPMVHKAFPSPSLVRGTPPPPPSKHGVPPPPPPPKECLYFGQLKHQKRTSISQKYKL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1701803 1705073 - MC06g_new0053 Mch6g0258 689705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0258 473 ProSiteProfiles C2 tensin-type domain profile. 138 277 IPR014020 -
Mch6g0258 473 Gene3D - 140 279 - -
Mch6g0258 473 SMART PTEN_C2_2 136 276 IPR014020 -
Mch6g0258 473 MobiDBLite consensus disorder prediction 413 454 - -
Mch6g0258 473 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 139 274 IPR035892 -
Mch6g0258 473 PANTHER FORMIN-J 1 348 IPR051144 -
Mch6g0258 473 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 126 IPR029021 -
Mch6g0258 473 MobiDBLite consensus disorder prediction 413 453 - -
Mch6g0258 473 Gene3D Protein tyrosine phosphatase superfamily 1 139 IPR029021 -
Mch6g0258 473 Pfam C2 domain of PTEN tumour-suppressor protein 137 274 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0258 Mch-Chr6:1701803 Mch6g0629 Mch-Chr6:4253783 1.39E-115 dispersed
Mch6g0257 Mch-Chr6:1676940 Mch6g0258 Mch-Chr6:1701803 3.76E-218 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0258 K28090 - csv:101215105 641.728