Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0258 ATGGGTTTCAACTTCAGAGAAGGTGATAGGCAAAGCCAAATTTCTAATATATTGACTCAGTATGACATGACAGTTTTGGATTATCCTGGGCATTATGAGGGATGTCCTTTATTGTCATTGGAGATGATCTTCCTTCGATCAAGTGAAAGCTGGTTGTCACTGGATGGTCAACAGAATGTGGTACTGATGCACTGTGAAAGAGGAGGCTGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGTTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAACCCTCAACCTTCCCACCTGAGATATCTTCAATACATTTCCAGGAGAAATTTGGATTCTGATTGGCCTCCATCTGATACACCTCTGGTTTTGGATTGTTTAATAATTAGAGTTATACCTCTCTTTGATGGGGGAAAAGGATGCAGGCATGTTGTGCATGTCTATGGTCAAGACCCCTCAGCTCCGGCCAACAGAACTTTGAAGCTTTTATTTTCGACTCCAATCAATAAGAAACATATCCGCAGCTACTTACAGGCAGAGTGTATGCTGGTGAAAGTTGACATTCGTTGCCGCGTGCAAGGGAATGTGGTTGTTGAATGCATCCATTTGGATGAAGATTTAGTAGGTGAGGAGATGGTATTTAGATTTATGTTTCACACAGCATTTGTTAGATCAAACATTATGATGCTGAGCTGTGATGAAGTTGATGTTGCATGGGATGCAAGGGACCAGTTCTCTAAGGACTTCAGAGTTGAGGCACTCTTTTTGGATGCTGATGCTGTTGTCCCCAATCTCGCCACAGCCCTTGACGATGAAGATGAATATGAAACAGGAGCTGCTTCTTTTGAAGAGTTTATTGAGGTTGAAGAGATCTTCAACAATGTAATGGATGGGCAGGAAGCCAAAGGGTCCAATGATCCTCCTGCATTCCAAGATTGTGCATCTGCCGATGGAAATTTTAAGCATGATAAGAAATCCGATTTTGATTCAGTGAAGGACATTACTGTGGATGATGTGAAATACAAACTGGATGAAAATATATACTCTGAGCTTAATGCAGTTAAGAACACTGTTGTGGAAGAGGACATGGATCCTCCATTCAGTAGACAACCACCACCATGGCTGCAAATCTATTCGTCCGTTTCTACTGTAATGGTGGCTGGTTCTATTCCACCTCCACCACCCCCACCTCCACCAATGGTGCATAAGGCATTTCCCTCACCATCTCTAGTGAGAGGAACACCACCTCCACCTCCTTCAAAGCATGGAGTACCACCTCCGCCACCACCTCCAAAAGAGTGCTTGTATTTTGGTCAATTGAAACACCAAAAAAGAACATCCATAAGTCAAAAGTACAAACTATAA 1422 42.9 MGFNFREGDRQSQISNILTQYDMTVLDYPGHYEGCPLLSLEMIFLRSSESWLSLDGQQNVVLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSPLNPQPSHLRYLQYISRRNLDSDWPPSDTPLVLDCLIIRVIPLFDGGKGCRHVVHVYGQDPSAPANRTLKLLFSTPINKKHIRSYLQAECMLVKVDIRCRVQGNVVVECIHLDEDLVGEEMVFRFMFHTAFVRSNIMMLSCDEVDVAWDARDQFSKDFRVEALFLDADAVVPNLATALDDEDEYETGAASFEEFIEVEEIFNNVMDGQEAKGSNDPPAFQDCASADGNFKHDKKSDFDSVKDITVDDVKYKLDENIYSELNAVKNTVVEEDMDPPFSRQPPPWLQIYSSVSTVMVAGSIPPPPPPPPPMVHKAFPSPSLVRGTPPPPPSKHGVPPPPPPPKECLYFGQLKHQKRTSISQKYKL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1701803 1705073 - MC06g_new0053 Mch6g0258 689705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0258 473 ProSiteProfiles C2 tensin-type domain profile. 138 277 IPR014020 -
Mch6g0258 473 Gene3D - 140 279 - -
Mch6g0258 473 SMART PTEN_C2_2 136 276 IPR014020 -
Mch6g0258 473 MobiDBLite consensus disorder prediction 413 454 - -
Mch6g0258 473 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 139 274 IPR035892 -
Mch6g0258 473 PANTHER FORMIN-J 1 348 IPR051144 -
Mch6g0258 473 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 126 IPR029021 -
Mch6g0258 473 MobiDBLite consensus disorder prediction 413 453 - -
Mch6g0258 473 Gene3D Protein tyrosine phosphatase superfamily 1 139 IPR029021 -
Mch6g0258 473 Pfam C2 domain of PTEN tumour-suppressor protein 137 274 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0258 K28090 - - csv:101215105 641.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0258 Mch-Chr6:1701803 Mch6g0629 Mch-Chr6:4253783 1.39E-115 dispersed
Mch6g0257 Mch-Chr6:1676940 Mch6g0258 Mch-Chr6:1701803 3.76E-218 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82