Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0289 CTAAACCTCAACCGAAGCTTCTCATTCAATTTTCAATTTCTCATTTCAATTCTCAATTTTCAGCCAATCCGAAATCGTAGCGTAGCAGCGAAAGCAGAAGAAGAATCCCTAATTCCGAGCTTTCCATCCATGGCGTCCGGAAAGCGATGCCACTACGAGGTCCTCGGCCTCCACCTCGACTGCACCGCCGACGAGATTCGATCGGCGTACAGAAAGCTCGCCCTCCAGCGCCACCCCGACAAGCTTGTCCAGTCCGGTTTGTCCCAAGCTGATGCCACCGCTCAGTTTCAAGAGCTCCAGCACGCTTACGAGGTCCTCTCTGATCCCAAGGAACGCGCCTGGTACGACTCTCATCGTTCCCAAATCCTCTTCTCTGATGCCGCCTCCGTCAATTCCAACTCTGTTGTTCCCAATCTGTTTCCGTTTTTCTCCAATACTGTTTATTCTGGCTATTCCGATTCTGGAAGAGGGTTCTATAAGATCTATGCTGACCTTTTTGACACGATTTACGGTAACGAGATTAATTTTGCCAAGAAATTAGGATTGCGTTTAGATGTGGTTCGCGAGGCTCCGGTCATGGGGAATGTGGATAGTCCGTACACGCAGGTGACTGCGTTTTATAATTACTGGCTCGGGTTTTGTACGGTTATGGATTTTTGCTGGGTTGATCAGTACGATGTTATGGCCGGTCCCAACCGGAAATCGAGGAGGCTAATGGAGGAGGATAACAAAAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAACGAGACAGTTAGAGGCTTGGCTGAATTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGGCTATGAAAAGGAACTTGGAAATGGAGAAGAAGAAGCAAGAGGAGAGGGAAAGAAAAAAGAAGTTAGAGAGGGAGAAATTGGAGAAGCTGAGGGCATACGAGGAACCAGATTGGGCAAAGGTCGAGGAGGTCGAGGAGGATGCAGGAGATGAGTTTGAGGAAGAGAATAAGAAAGAGAAAGAGCTGTACTGTGTTTTGTGTGGGAAAAAGTTCAAGAGTGAAAAGCAATGGAAGAATCACGAGCAGTCTAAAAAGCACAAGGAGAAGGTTGCAGAGTTCAGAGAATCACTAGATGATGAGGATGAATCTGAAGGGTTTGTTGATGAAGGAGAAGCTGAAGCAGAAGAGACTCTGCTGGATGATGAGATGGATAAACTAGGGGAGCAGTTCAAGGAGAGTTTCGATGTTAAAATCGAAGAAACTGAAAGTGGGCCAGAACTTAGTGGGAGTGAACACACTGATGTTCATGAGATTGATAGAACGGATATGGTCGCAGAGGCACTTGGATTGGATGACGACGACGAACTTGATGTTCTTGAAGCAATGGCGGCTGGGCTTCGGAATAGGAAAAATGCTGCATCAGTGCAGCAGCCTAAAGCTTCTTCAGTAAAAACTCGTGTCGAGAATGAGAGCGATGAGCTTAGCCCAGGAGAATATGAAAATGGCAAGAGGGGGAGAAGGAACCGTCGAGCCAAAAAGAAGGGCAAGGGAAATGATGAACCTATGAATGAAACAGATTCCCAAAATGACAAAAACATTGGAGATGATACATCACATCGACATGATTCTCCTTCACATTCGTCAGGTAACAAAGAAAGTAGTGATAAGGGAGCCAGCGAGTTGGCAAAAGAACAAAGGACTTCAAGTAAACCTGCTGATCGAAAAGCAGTTGTGCAGAACGACATGAAGACGAACCCTAGGCATTCATCTAAAGGAAAGAAATCCAAGGCAACAACAAAGGATTCCGCCAATTCATGCGAAACATGTGGAGAGCAGTTTGAATCAAGGAATAAACTGCACAAGCATTTGGGAGCAACTGGACATGCTGCTCTAAAATATCGATGA 1890 45.98 LNLNRSFSFNFQFLISILNFQPIRNRSVAAKAEEESLIPSFPSMASGKRCHYEVLGLHLDCTADEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDAASVNSNSVVPNLFPFFSNTVYSGYSDSGRGFYKIYADLFDTIYGNEINFAKKLGLRLDVVREAPVMGNVDSPYTQVTAFYNYWLGFCTVMDFCWVDQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNLEMEKKKQEERERKKKLEREKLEKLRAYEEPDWAKVEEVEEDAGDEFEEENKKEKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRESLDDEDESEGFVDEGEAEAEETLLDDEMDKLGEQFKESFDVKIEETESGPELSGSEHTDVHEIDRTDMVAEALGLDDDDELDVLEAMAAGLRNRKNAASVQQPKASSVKTRVENESDELSPGEYENGKRGRRNRRAKKKGKGNDEPMNETDSQNDKNIGDDTSHRHDSPSHSSGNKESSDKGASELAKEQRTSSKPADRKAVVQNDMKTNPRHSSKGKKSKATTKDSANSCETCGEQFESRNKLHKHLGATGHAALKYR 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1905689 1908659 - MC06g0229 Mch6g0289 689736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0289 629 Pfam DnaJ domain 51 116 IPR001623 -
Mch6g0289 629 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 44 629 IPR044648 -
Mch6g0289 629 MobiDBLite consensus disorder prediction 461 608 - -
Mch6g0289 629 SUPERFAMILY Chaperone J-domain 40 115 IPR036869 -
Mch6g0289 629 ProSitePatterns Zinc finger C2H2 type domain signature. 601 623 IPR013087 -
Mch6g0289 629 SUPERFAMILY beta-beta-alpha zinc fingers 326 383 IPR036236 -
Mch6g0289 629 CDD DnaJ 50 108 IPR001623 -
Mch6g0289 629 ProSiteProfiles dnaJ domain profile. 50 119 IPR001623 -
Mch6g0289 629 MobiDBLite consensus disorder prediction 551 576 - -
Mch6g0289 629 MobiDBLite consensus disorder prediction 372 397 - -
Mch6g0289 629 Pfam Zinc-finger double-stranded RNA-binding 337 362 IPR022755 -
Mch6g0289 629 Coils Coil 236 256 - -
Mch6g0289 629 SMART c2h2final6 599 623 IPR013087 -
Mch6g0289 629 SMART c2h2final6 337 361 IPR013087 -
Mch6g0289 629 MobiDBLite consensus disorder prediction 480 500 - -
Mch6g0289 629 SMART ZnF_U1_5 334 368 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Mch6g0289 629 SMART dnaj_3 49 111 IPR001623 -
Mch6g0289 629 MobiDBLite consensus disorder prediction 465 479 - -
Mch6g0289 629 Coils Coil 273 307 - -
Mch6g0289 629 MobiDBLite consensus disorder prediction 509 544 - -
Mch6g0289 629 MobiDBLite consensus disorder prediction 349 371 - -
Mch6g0289 629 MobiDBLite consensus disorder prediction 398 433 - -
Mch6g0289 629 PRINTS DnaJ domain signature 91 111 IPR001623 -
Mch6g0289 629 PRINTS DnaJ domain signature 52 70 IPR001623 -
Mch6g0289 629 PRINTS DnaJ domain signature 70 85 IPR001623 -
Mch6g0289 629 ProSiteProfiles Zinc finger C2H2 type domain profile. 599 628 IPR013087 -
Mch6g0289 629 MobiDBLite consensus disorder prediction 349 433 - -
Mch6g0289 629 Pfam Zuotin-like, zuotin homology domain 187 272 IPR054076 -
Mch6g0289 629 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Mch6g0289 629 Gene3D Classic Zinc Finger 322 385 - -
Mch6g0289 629 Gene3D DnaJ domain 42 135 IPR036869 -
Mch6g0289 629 ProSitePatterns Zinc finger C2H2 type domain signature. 339 361 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0289 Mch-Chr6:1905689 Mch9g1942 Mch-Chr9:20887675 2.31E-11 dispersed
Mch6g0289 Mch-Chr6:1905689 Mch4g1348 Mch-Chr4:16840904 1.12E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43507 PF00226 DnaJ 3.90E-21 CL0392 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0289 K09506 - csv:101217729 898.656