Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0297 ATGGCGAACACAGCAACAGTAACCTCCGGTGCGATTTCGAAGATATTGGCAAATCCGTCCTCGGACTCGCCCTCGGATGTTCCGGAGATCGTGGTTCAGGTCGTCGATCTCGATCCCAAGGGGAATCGGTACATGTTTACTGCTAGCGATGGGAGTGCGAAGCTAAGAGGTATTCTCCCATCCAAATTTACGTCTGAGGTTATCTCTGGAAACATTCAACATCTGGGTCTTATCCGTATTCTTGGATACACTCTCAATGATATCCCAAACAAGGAAGAAAAGTATCTAATCGTGACGGATTGTGAGGTGGTTTCTCCTGCTCTAGGAATGGAAGTTAAAACTGAGGTTAAGAAAGAGGATGTGGGCATTGTTTTGAAACCAAAACAAGAGTTTGATGATAACAAGAGTGCACCGAATACCGGGGCTGGTATCCTTTTAAAGCCAAAGCAAGAATTGGTTACCAAATCAGCAGCTCAAATTGTACACGAGCAGCGTACAAATATGGCACCAGCTGCACGGATGTCCATGACAAGGAGAGTTCATCCCCTTGTTTCTTTAAATCCTTATCACGCAAATTGGACCATCAAAGCCCGTGTTACAAACAAAGAAAAGATGCGTACATACAAGAATGCTCGAGGAGAAGGTTGCGTTTTCAATGTGGAGTTGACAGATGATGATGGTACACAAATACAGGCTACGATGTTTAATGAAGCTGCAAGGAAGTTCTATGAAAAATTTGCCCTTGGCAAAGTTTATTACATCTCTAAGGGAACTTTGAAAGTTGCCAATAAGCAGTATAATACAGTTCAAAATGATTACGAAATGACTTTAAATGAGAATTCTGAAGTGGATGAGGTCAGCAATGAAGCTGCTCTCATTCCTAAAATGAAATTCAATTTTGTCAAGATTGACATGTTAGGTACTCACGTGAACGGGAAGGATCTTGTTGATGTTATTGGAGTTGTTCAAAGTGTTTCCCCTACGATGAGCATTCGAAGGAAAAGCAACAATGACATAGCTCCAAAACGTGATATAACTATTGCCGATGAGACGAAGAAGACAGTCGTGATATCTCTGTGGAATGATCTTGCGACCAATGTGGGGCAGGAACTGCTTGACATTGCTGATCAATCTCCCGTAATTGCATTGAAATATCTCAGAGTTGGAGATTTTCAAGGTGTATCTCTGTCGACAATAAGTAGGAGCAGAGTTTTGATTAATCCAGACATTCCGGAAGCTAAACATTTGAGATCCTGGTATGATTCTGAAGGAAAAGCCATGTCCATGGCTTCTGTCAGCTCTGGCCTGAGCCCATCATCCAAGACTGGGTCGAGGTCCATGTATTCCGACCGTGTTTCCCTGTCTCATATACTCCAAGGCAAATCATTGGGTGAAGAAAAGGTATTATATTCTTTTGATAATGACATGAAGTTATTTCCGCAGCCAATGTTCTTCAGCATTAGAGCATATGTTAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGTGCATGTAAAACATGCAACAAGAAGGTGACTGAAGCAATTGGATCTGGATATTGGTGTGAAAATTGCCAGAAAAATGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTTTCTGATGCAAGCGGCGAAGCTTGGCTCTCTACATTCAACGAAGAAGCAGAGAGGCTTATTGGATGCTCTGCTGATGAGCTTGACCAGCTCAAATCACAGATGGGAGAGGAGAATTCATATCAATTGAAACTCAAAGAAGCCACTTGGGTTCCCCATTTATTCCGGGTTAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCTGTTGCTCCAGTTGACTTTGCTGCTGAATCCAGATTCTTGCTAGAAGAGATAGCAAAGATGAAAGTTCCCTAA 1923 42.02 MANTATVTSGAISKILANPSSDSPSDVPEIVVQVVDLDPKGNRYMFTASDGSAKLRGILPSKFTSEVISGNIQHLGLIRILGYTLNDIPNKEEKYLIVTDCEVVSPALGMEVKTEVKKEDVGIVLKPKQEFDDNKSAPNTGAGILLKPKQELVTKSAAQIVHEQRTNMAPAARMSMTRRVHPLVSLNPYHANWTIKARVTNKEKMRTYKNARGEGCVFNVELTDDDGTQIQATMFNEAARKFYEKFALGKVYYISKGTLKVANKQYNTVQNDYEMTLNENSEVDEVSNEAALIPKMKFNFVKIDMLGTHVNGKDLVDVIGVVQSVSPTMSIRRKSNNDIAPKRDITIADETKKTVVISLWNDLATNVGQELLDIADQSPVIALKYLRVGDFQGVSLSTISRSRVLINPDIPEAKHLRSWYDSEGKAMSMASVSSGLSPSSKTGSRSMYSDRVSLSHILQGKSLGEEKVLYSFDNDMKLFPQPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCENCQKNDEECSLRYIMVVRVSDASGEAWLSTFNEEAERLIGCSADELDQLKSQMGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKVP 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1947362 1951017 + MC06g0237 Mch6g0297 689744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0297 640 CDD RPA1_DBD_C 482 636 IPR047192 -
Mch6g0297 640 Gene3D - 179 288 IPR012340 -
Mch6g0297 640 SUPERFAMILY Nucleic acid-binding proteins 6 107 IPR012340 -
Mch6g0297 640 Pfam OB-fold nucleic acid binding domain 193 277 IPR004365 GO:0003676(InterPro)
Mch6g0297 640 CDD RPA1_DBD_B 315 421 - -
Mch6g0297 640 Gene3D - 437 637 IPR012340 -
Mch6g0297 640 NCBIfam replication factor-a protein 1 (rpa1) 6 636 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Mch6g0297 640 FunFam Replication protein A subunit 179 288 - -
Mch6g0297 640 CDD RPA1_DBD_A 182 285 - -
Mch6g0297 640 Pfam Replication factor-A protein 1, N-terminal domain 7 105 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Mch6g0297 640 FunFam Replication protein A subunit 6 116 - -
Mch6g0297 640 Pfam Replication factor-A C terminal domain 484 630 IPR013955 -
Mch6g0297 640 PANTHER REPLICATION FACTOR A 1, RFA1 181 614 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Mch6g0297 640 FunFam Replication protein A subunit 436 637 - -
Mch6g0297 640 Pfam Replication protein A OB domain 310 407 IPR031657 -
Mch6g0297 640 Gene3D - 293 433 IPR012340 -
Mch6g0297 640 Gene3D - 6 114 IPR012340 -
Mch6g0297 640 Coils Coil 555 575 - -
Mch6g0297 640 SUPERFAMILY Nucleic acid-binding proteins 180 289 IPR012340 -
Mch6g0297 640 FunFam Replication protein A subunit 292 431 - -
Mch6g0297 640 SUPERFAMILY Nucleic acid-binding proteins 476 637 IPR012340 -
Mch6g0297 640 SUPERFAMILY Nucleic acid-binding proteins 298 427 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0297 Mch-Chr6:1947362 Mch8g3235 Mch-Chr8:34368673 5.10E-84 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0297 K07466 - csv:101208545 1016.53