Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0305 ATGAGGTCTCGCCGCTTGGATTCTACTGGATCCGTCGCCGACCTCACCGGCTTCGGCGTCTTGCTTCTGTTTCTACTTTCGAGCTTCAGTTTCACTTTTACAGAGGCGTATGATGCACTTGATCCCAACGGGAACATTACAATCAAATGGGATGTAATGAGCTGGACCCCGGATGGCTATGTGGCCGTTGTTACAATGTACAACTTCCAGCAGTACCGTCATATTCAAGCTCCAGGCTGGACATTGGGGTGGACATGGGCAAAGAAGGAAGTAATTTGGAGCATGATGGGAGGCCAAACAACAGATCAGGGAGACTGTTCAAAATTCAAAGGAAATGTTCCACATTGCTGCAGGAAGGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATGAACTCATGGGCCCAAGACCCCGCCAATGCTGCAAGTTCGTTCCAAGTCAGTGTCGGTTCCGCAGGAACAAGTAACAAAACTGTCAGACTCCCCAAAAACTTCACCCTTAAAGCACCAGGACCTGGTTACACTTGTGGGCCAGCAAAGATTGTGAGGCCAACCAAGTTTATATCTGGAGATAAAAGAAGAATAACTCAAGCTTTGATGACTTGGAATATTACATGCACGTATTCTCAATTCCTTGCTCAGAAGACACCCACCTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACCATAGTCAACTGCCCCACCTGCACTTGTGGATGTCAAAACAACTCCTCCAGTCCTGGTAGCTGTGTGGATCCAGATTCTCCATATTTAGCTTCAGTAGTATCCACTCCTGATAAATCCGGTAATGCACCCTTGGTTCAGTGTACCAGTCACATGTGCCCCATTCGAGTCCATTGGCATGTGAAGCTAAATTACAAGGACTATTGGAGGGTGAAGATTACAATCACCAATTTCAATTATAGAATGAACTATTCACTCTGGAATCTCGTGGTGCAGCATCCCAATTTTGACAATATAACTAAATTATTCAGCTTTAACTATAAGTCGTTGAGCCCATATGGTGACCTGAATGATACTGCAATGTTATGGGGAGTTAAGTTCTACAATGATTTTCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCAGAGCTCCTATTCCAGAAAGACCAGAACACTTTCACTTTCGACAAGGGTTGGGCTTTCCCAAGGAGAGTCTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTGCTAATTCATCCGATTGTGACCATCTTACTATCTTTGGTACTACTGTTGAATTTTGCACTATAA 1377 44.59 MRSRRLDSTGSVADLTGFGVLLLFLLSSFSFTFTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTDQGDCSKFKGNVPHCCRKDPTVVDLLPGTPYNQQIANCCKGGVMNSWAQDPANAASSFQVSVGSAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVRPTKFISGDKRRITQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNSSSPGSCVDPDSPYLASVVSTPDKSGNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYSLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDFLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPAISLLIHPIVTILLSLVLLLNFAL 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2022687 2027418 + MC06g0245 Mch6g0305 689752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0305 458 PIRSF COBRA 10 457 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch6g0305 458 PANTHER PROTEIN COBRA 25 446 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Mch6g0305 458 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2378 Mch-Chr4:24926046 Mch6g0305 Mch-Chr6:2022687 3.17E-162 dispersed
Mch6g0305 Mch-Chr6:2022687 Mch8g2363 Mch-Chr8:26762816 1.19E-235 dispersed
Mch6g0305 Mch-Chr6:2022687 Mch6g0306 Mch-Chr6:2022991 1.35E-232 tandem
Mch10g0559 Mch-Chr10:3682068 Mch6g0305 Mch-Chr6:2022687 3.25E-172 transposed
Mch4g0514 Mch-Chr4:3304482 Mch6g0305 Mch-Chr6:2022687 8.95E-147 transposed
Mch5g0748 Mch-Chr5:5038385 Mch6g0305 Mch-Chr6:2022687 1.06E-42 transposed
Mch3g1681 Mch-Chr3:18443883 Mch6g0305 Mch-Chr6:2022687 6.08E-112 wgd
Mch6g0305 Mch-Chr6:2022687 Mch8g2362 Mch-Chr8:26761020 1.75E-267 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0305 - - - 0.0