Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0305 ATGAGGTCTCGCCGCTTGGATTCTACTGGATCCGTCGCCGACCTCACCGGCTTCGGCGTCTTGCTTCTGTTTCTACTTTCGAGCTTCAGTTTCACTTTTACAGAGGCGTATGATGCACTTGATCCCAACGGGAACATTACAATCAAATGGGATGTAATGAGCTGGACCCCGGATGGCTATGTGGCCGTTGTTACAATGTACAACTTCCAGCAGTACCGTCATATTCAAGCTCCAGGCTGGACATTGGGGTGGACATGGGCAAAGAAGGAAGTAATTTGGAGCATGATGGGAGGCCAAACAACAGATCAGGGAGACTGTTCAAAATTCAAAGGAAATGTTCCACATTGCTGCAGGAAGGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATGAACTCATGGGCCCAAGACCCCGCCAATGCTGCAAGTTCGTTCCAAGTCAGTGTCGGTTCCGCAGGAACAAGTAACAAAACTGTCAGACTCCCCAAAAACTTCACCCTTAAAGCACCAGGACCTGGTTACACTTGTGGGCCAGCAAAGATTGTGAGGCCAACCAAGTTTATATCTGGAGATAAAAGAAGAATAACTCAAGCTTTGATGACTTGGAATATTACATGCACGTATTCTCAATTCCTTGCTCAGAAGACACCCACCTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACCATAGTCAACTGCCCCACCTGCACTTGTGGATGTCAAAACAACTCCTCCAGTCCTGGTAGCTGTGTGGATCCAGATTCTCCATATTTAGCTTCAGTAGTATCCACTCCTGATAAATCCGGTAATGCACCCTTGGTTCAGTGTACCAGTCACATGTGCCCCATTCGAGTCCATTGGCATGTGAAGCTAAATTACAAGGACTATTGGAGGGTGAAGATTACAATCACCAATTTCAATTATAGAATGAACTATTCACTCTGGAATCTCGTGGTGCAGCATCCCAATTTTGACAATATAACTAAATTATTCAGCTTTAACTATAAGTCGTTGAGCCCATATGGTGACCTGAATGATACTGCAATGTTATGGGGAGTTAAGTTCTACAATGATTTTCTCAATCAAGCTGGCCCTCTTGGTAATGTGCAGTCAGAGCTCCTATTCCAGAAAGACCAGAACACTTTCACTTTCGACAAGGGTTGGGCTTTCCCAAGGAGAGTCTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTATATCTCTGCTAATTCATCCGATTGTGACCATCTTACTATCTTTGGTACTACTGTTGAATTTTGCACTATAA 1377 44.59 MRSRRLDSTGSVADLTGFGVLLLFLLSSFSFTFTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTDQGDCSKFKGNVPHCCRKDPTVVDLLPGTPYNQQIANCCKGGVMNSWAQDPANAASSFQVSVGSAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVRPTKFISGDKRRITQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNSSSPGSCVDPDSPYLASVVSTPDKSGNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYSLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDFLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPAISLLIHPIVTILLSLVLLLNFAL 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2022687 2027418 + MC06g0245 Mch6g0305 689752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0305 458 PIRSF COBRA 10 457 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch6g0305 458 PANTHER PROTEIN COBRA 25 446 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Mch6g0305 458 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0305 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2378 Mch-Chr4:24926046 Mch6g0305 Mch-Chr6:2022687 3.17E-162 dispersed
Mch6g0305 Mch-Chr6:2022687 Mch8g2363 Mch-Chr8:26762816 1.19E-235 dispersed
Mch6g0305 Mch-Chr6:2022687 Mch6g0306 Mch-Chr6:2022991 1.35E-232 tandem
Mch10g0559 Mch-Chr10:3682068 Mch6g0305 Mch-Chr6:2022687 3.25E-172 transposed
Mch4g0514 Mch-Chr4:3304482 Mch6g0305 Mch-Chr6:2022687 8.95E-147 transposed
Mch5g0748 Mch-Chr5:5038385 Mch6g0305 Mch-Chr6:2022687 1.06E-42 transposed
Mch3g1681 Mch-Chr3:18443883 Mch6g0305 Mch-Chr6:2022687 6.08E-112 wgd
Mch6g0305 Mch-Chr6:2022687 Mch8g2362 Mch-Chr8:26761020 1.75E-267 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0305 . 48 448 COBRA Gene Family AT5G60920 79.7 5.7e-210 726.9
Mch8g2362 . 52 450 COBRA Gene Family AT5G60920 76.2 1.8e-200 695.3
Mch8g2363 . 111 507 COBRA Gene Family AT5G60920 68.3 4.0e-179 624.4
Mch6g0306 . 55 450 COBRA Gene Family AT5G60920 68.1 5.4e-176 614.0
Mch10g0559 . 32 429 COBRA Gene Family AT5G60920 54.2 6.2e-132 467.6
Mch4g2378 . 85 385 COBRA Gene Family AT5G60920 53.2 5.7e-117 417.9
Mch3g1681 . 22 230 COBRA Gene Family AT5G60920 67.0 4.7e-87 318.5
Mch6g0305 . 18 448 COBRA Gene Family AT3G02210 73.4 3.2e-206 714.5
Mch8g2362 . 31 456 COBRA Gene Family AT3G02210 74.2 1.8e-201 698.7
Mch8g2363 . 84 509 COBRA Gene Family AT3G02210 66.5 4.0e-180 627.9
Mch6g0306 . 27 454 COBRA Gene Family AT3G02210 65.8 1.1e-177 619.8
Mch10g0559 . 3 429 COBRA Gene Family AT3G02210 54.5 5.6e-142 501.1
Mch4g2378 . 71 385 COBRA Gene Family AT3G02210 54.1 4.5e-123 438.3
Mch3g1681 . 10 234 COBRA Gene Family AT3G02210 64.4 5.0e-90 328.6
Mch6g0305 . 18 453 COBRA Gene Family AT3G29810 74.7 1.7e-204 708.8
Mch8g2362 . 40 456 COBRA Gene Family AT3G29810 72.4 1.6e-194 675.6
Mch8g2363 . 94 508 COBRA Gene Family AT3G29810 65.6 1.7e-175 612.5
Mch6g0306 . 38 448 COBRA Gene Family AT3G29810 66.1 9.2e-174 606.7
Mch10g0559 . 15 431 COBRA Gene Family AT3G29810 56.3 6.1e-141 497.7
Mch4g2378 . 72 385 COBRA Gene Family AT3G29810 56.4 9.4e-126 447.2
Mch3g1681 . 3 234 COBRA Gene Family AT3G29810 62.1 1.5e-91 333.6
Mch8g2363 . 80 419 COBRA Gene Family AT5G15630 82.4 1.6e-178 622.1
Mch6g0306 . 32 363 COBRA Gene Family AT5G15630 83.4 3.1e-177 617.8
Mch6g0305 . 31 360 COBRA Gene Family AT5G15630 72.4 2.5e-150 528.5
Mch8g2362 . 38 366 COBRA Gene Family AT5G15630 68.1 1.2e-144 509.6
Mch3g1681 . 10 243 COBRA Gene Family AT5G15630 67.1 2.6e-99 359.0
Mch10g0559 . 20 342 COBRA Gene Family AT5G15630 50.6 1.4e-97 353.2
Mch6g0305 . 18 224 COBRA Gene Family AT5G60950 58.2 1.9e-65 245.7
Mch8g2362 . 48 228 COBRA Gene Family AT5G60950 60.2 2.0e-62 235.7
Mch8g2363 . 107 287 COBRA Gene Family AT5G60950 58.0 5.1e-58 221.1
Mch6g0306 . 51 231 COBRA Gene Family AT5G60950 56.9 4.3e-57 218.0
Mch10g0559 . 16 416 COBRA Gene Family AT1G09790 61.0 2.9e-151 531.9
Mch6g0306 . 41 434 COBRA Gene Family AT1G09790 53.7 6.7e-132 467.6
Mch6g0305 . 34 431 COBRA Gene Family AT1G09790 53.7 1.5e-131 466.5
Mch8g2362 . 40 436 COBRA Gene Family AT1G09790 53.5 2.6e-131 465.7
Mch8g2363 . 83 490 COBRA Gene Family AT1G09790 51.3 4.8e-130 461.5
Mch5g0748 . 35 647 COBRA Gene Family AT4G16120 66.4 3.8e-256 880.9
Mch10g1227 . 53 650 COBRA Gene Family AT4G16120 53.2 4.7e-198 688.0
Mch5g0748 . 15 653 COBRA Gene Family AT3G16860 61.7 4.5e-241 830.9
Mch10g1227 . 53 656 COBRA Gene Family AT3G16860 52.2 4.7e-190 661.4
Mch5g0748 . 30 634 COBRA Gene Family AT5G49270 63.7 4.1e-242 834.3
Mch10g1227 . 55 651 COBRA Gene Family AT5G49270 51.1 1.8e-189 659.4
Mch10g1227 . 53 669 COBRA Gene Family AT3G20580 64.7 3.3e-247 851.3
Mch5g0748 . 28 655 COBRA Gene Family AT3G20580 53.5 3.0e-208 721.8
Mch10g1227 . 57 674 COBRA Gene Family AT4G27110 61.6 3.6e-230 794.7
Mch5g0748 . 29 649 COBRA Gene Family AT4G27110 51.8 1.5e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73