Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0313 ATGCAAGATATACAGTCGATCGCCGGAGGGAGTCGGTTGTTCGGCGGAGGCGGTGGCGGAGACCGGCGCCTGAGGCCGCACCTCCACCACCACCAGAACCACCAGGCGTTGAAGTGCCCGAGGTGTGATTCTCTCAACACCAAATTCTGTTATTACAATAACTATAATCTCTCTCAGCCGCGGCACTTCTGCAAGAGCTGCCGGAGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGGAAAACCAAACGCTCCTCCAAATCCAAGTCCACGTCCGACGCCGCCGCCGCCGCCGTTGCCGCGCCTCCGCCGCTTCGTGAACGTAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCCACCACCACAACCACGGCCGCCGCGGCGGGCACCGAGGCAGTCTCCGCTCCGTCCTCGAATTCCACCTCGACTCTGTTGAGCGTACAGGATTCGAAATTGTTCCCCGCTCCAAGTACAAACCCTAATTTCGAGGCGGCGCCTCCGTTGGCGGACTGCGGAATATTCTCGGAAATCGGAAGCTTCACGAGCATGATCTCGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCCCAGACGTGACGCCGTTCGCGATGAATCATAATCATCATCATCATCAGTTCCAAAACCAACAGCCGAACCAGTGGCAGCCACAGAGAATGATGAGCGTGAGCGACGAACTGAAGATGCAGGAGATCATAGGCGGCAGTGGCGGCGGCGGCGGGTACATGGATCAAACGGCCCAGGTGGATCCATCATCGGCGCTCCAGAACAACAGAGGAAGCAACATTGGATTTGGAGCGTTGGATTGGCAAACGAACGGTGACGATCAAACAATATTTGATCTGCCGAGCGCCGTTGATCAAGCATACTGGAGTCAGAATCAATGGAGTGATCAAGACCAGCCCAATCTATACCTTCCGTGA 981 57.19 MQDIQSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSKSKSTSDAAAAAVAAPPPLRERKSTSHSSSESSSLTATTTTTAAAAGTEAVSAPSSNSTSTLLSVQDSKLFPAPSTNPNFEAAPPLADCGIFSEIGSFTSMISSSNETLPFGFGNIPDVTPFAMNHNHHHHQFQNQQPNQWQPQRMMSVSDELKMQEIIGGSGGGGGYMDQTAQVDPSSALQNNRGSNIGFGALDWQTNGDDQTIFDLPSAVDQAYWSQNQWSDQDQPNLYLP 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2083365 2085614 - MC06g0253 Mch6g0313 689760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0313 326 MobiDBLite consensus disorder prediction 1 26 - -
Mch6g0313 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 223 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0313 326 MobiDBLite consensus disorder prediction 82 152 - -
Mch6g0313 326 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch6g0313 326 MobiDBLite consensus disorder prediction 121 152 - -
Mch6g0313 326 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch6g0313 326 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0313 Mch-Chr6:2083365 Mch6g2337 Mch-Chr6:25274741 1.93E-31 dispersed
Mch3g1672 Mch-Chr3:18392143 Mch6g0313 Mch-Chr6:2083365 3.73E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT1G29160 54.1 1.6e-44 176.0
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT1G29160 52.9 1.3e-41 166.4
Mch3g1085 . 12 169 C2C2-Dof Transcription Factor Family AT2G34140 53.4 2.5e-42 168.7
Mch1g1938 . 13 164 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-40 162.5
Mch5g1836 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 5.5e-38 155.2
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 61.7 7.2e-38 154.8
Mch1g0729 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 66.2 7.9e-39 158.3
Mch4g2138 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 66.0 9.6e-37 151.4
Mch2g0909 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.6e-36 150.6
Mch9g1562 . 59 218 C2C2-Dof Transcription Factor Family AT3G55370 51.3 4.3e-39 159.1
Mch6g0313 . 28 327 C2C2-Dof Transcription Factor Family AT5G60850 51.6 8.7e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004522 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43510 PF02701 zf-Dof 4.40E-33 No_clan Mch TF