Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g0313 | ATGCAAGATATACAGTCGATCGCCGGAGGGAGTCGGTTGTTCGGCGGAGGCGGTGGCGGAGACCGGCGCCTGAGGCCGCACCTCCACCACCACCAGAACCACCAGGCGTTGAAGTGCCCGAGGTGTGATTCTCTCAACACCAAATTCTGTTATTACAATAACTATAATCTCTCTCAGCCGCGGCACTTCTGCAAGAGCTGCCGGAGATACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGAGGCGGCTGCCGGAAAACCAAACGCTCCTCCAAATCCAAGTCCACGTCCGACGCCGCCGCCGCCGCCGTTGCCGCGCCTCCGCCGCTTCGTGAACGTAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCCACCACCACAACCACGGCCGCCGCGGCGGGCACCGAGGCAGTCTCCGCTCCGTCCTCGAATTCCACCTCGACTCTGTTGAGCGTACAGGATTCGAAATTGTTCCCCGCTCCAAGTACAAACCCTAATTTCGAGGCGGCGCCTCCGTTGGCGGACTGCGGAATATTCTCGGAAATCGGAAGCTTCACGAGCATGATCTCGTCGTCGAACGAGACATTGCCGTTCGGATTCGGCAACATCCCAGACGTGACGCCGTTCGCGATGAATCATAATCATCATCATCATCAGTTCCAAAACCAACAGCCGAACCAGTGGCAGCCACAGAGAATGATGAGCGTGAGCGACGAACTGAAGATGCAGGAGATCATAGGCGGCAGTGGCGGCGGCGGCGGGTACATGGATCAAACGGCCCAGGTGGATCCATCATCGGCGCTCCAGAACAACAGAGGAAGCAACATTGGATTTGGAGCGTTGGATTGGCAAACGAACGGTGACGATCAAACAATATTTGATCTGCCGAGCGCCGTTGATCAAGCATACTGGAGTCAGAATCAATGGAGTGATCAAGACCAGCCCAATCTATACCTTCCGTGA | 981 | 57.19 | MQDIQSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSKSKSTSDAAAAAVAAPPPLRERKSTSHSSSESSSLTATTTTTAAAAGTEAVSAPSSNSTSTLLSVQDSKLFPAPSTNPNFEAAPPLADCGIFSEIGSFTSMISSSNETLPFGFGNIPDVTPFAMNHNHHHHQFQNQQPNQWQPQRMMSVSDELKMQEIIGGSGGGGGYMDQTAQVDPSSALQNNRGSNIGFGALDWQTNGDDQTIFDLPSAVDQAYWSQNQWSDQDQPNLYLP | 326 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2083365 | 2085614 | - | MC06g0253 | Mch6g0313 | 689760 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g0313 | 326 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Mch6g0313 | 326 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 29 | 223 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch6g0313 | 326 | MobiDBLite | consensus disorder prediction | 82 | 152 | - | - | |
| Mch6g0313 | 326 | ProSitePatterns | Zinc finger Dof-type signature. | 39 | 75 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch6g0313 | 326 | MobiDBLite | consensus disorder prediction | 121 | 152 | - | - | |
| Mch6g0313 | 326 | ProSiteProfiles | Zinc finger Dof-type profile. | 37 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch6g0313 | 326 | Pfam | Dof domain, zinc finger | 35 | 91 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g0313 | Mch-Chr6:2083365 | Mch6g2337 | Mch-Chr6:25274741 | 1.93E-31 | dispersed | |
| Mch3g1672 | Mch-Chr3:18392143 | Mch6g0313 | Mch-Chr6:2083365 | 3.73E-28 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43510 | PF02701 | zf-Dof | 4.40E-33 | No_clan | Mch | TF |
Pathway information