Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0359 ATGACTTGGAGGAGAGTTTTGAAGTCCGTGCAGGCACTTTTGGCCCATGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTTTCCTACAGTTGGTGGACTATCTTTTTTCCACTTTGGGTATTTCATACGATTGCTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAACCGTCATTGGGCACCGTGCCATGCTGTTGTTGCAACGCCTTTGCTTATAGCATTTGAAATACTTCTTTGTATATACCTCGAGAGCCTTTCTGTTTATGGTTTTGCCGCTGTGAGTTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAAGCATTATTTTAATAGATAATTTCAGAATGTGTAGGTCACTAATGCCTGGTGACGATGAAAGCATGAGTGATGAGGCAATATGGGAGACTCTTCCTCACTTTTGGGTTGCCATTTCCATGGTCTTCTTTGTTGCTGCTACAATATTTACCCTACTGAAGCTGTGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTGTTTATAAATTTTGGCATTGCAGAGTGCTTTGCCTTTCTTGTTTGTACAAAGTGGTCTAATCCTGCGATTCATAGAAATATTCAAACAAGAGAAAGCTGTTCATCATCAACAGTAGTTAGATATCTAGATTGGAACAGTGGTATAATAGTTTATCCAGAGCCGGATCAGCATCAGGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAATCCTTCTCTGCATGTATTTAGAGGGAACGCCCGCCGGTGCGAAAAATATACCACTTCCTGTTCTTTTCTCGCCCCTTTTTATATTGCAAGGTGCTGCTGTTATTTATGCTGCATCTAGGTTGTTGGAGAAAGTTGTACTTCTCTTAAGAGGTGGATCTGGCACAGCATTGTATTTCAGTTTTTCTGCTAGGGCTCATGCCTGCTTGGATTTCTTTCATCATGGTTCAAGGTTATTGGGGTGGTGGTCTATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTTCCATGAGGGTGCATCCGGGTATAATACTTTTAGTGGATATCCTCCTGAGATTGTGAAGAAGATGCCTAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCGGCACTTGGGGAGCAGACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTGTGTCGGGTTTGTTTCGAGGGGGAAATTAGCATCGTCCTTCTTCCGTGTAGGCATCGCATACTATGCAGCATCTGCTCTGAGAAATGTAAAAAGTGCCCAATATGCCGCGTCTCTATCGAAGAACGATTACCGGTTTACGATGTTTAG 1404 43.45 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFVSYSWWTIFFPLWVFHTIAARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFEILLCIYLESLSVYGFAAVSLKIVFLPLLAFESIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATIFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRESCSSSTVVRYLDWNSGIIVYPEPDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPAGAKNIPLPVLFSPLFILQGAAVIYAASRLLEKVVLLLRGGSGTALYFSFSARAHACLDFFHHGSRLLGWWSIDEGSREEQARLFHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISIVLLPCRHRILCSICSEKCKKCPICRVSIEERLPVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2389051 2396846 + MC06g0295 Mch6g0359 689806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0359 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
Mch6g0359 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Mch6g0359 467 SUPERFAMILY RING/U-box 411 462 - -
Mch6g0359 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
Mch6g0359 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Mch6g0359 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Mch6g0359 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1241 Mch-Chr4:14349404 Mch6g0359 Mch-Chr6:2389051 1.62E-229 dispersed
Mch6g0359 Mch-Chr6:2389051 Mch3g0843 Mch-Chr3:12438882 4.22E-06 dispersed
Mch6g0359 Mch-Chr6:2389051 Mch4g0048 Mch-Chr4:343357 2.28E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0359 - - - 0.0