Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0374 ATGCGCATGAGCTGTAATGGATGCCGAGTTCTCCGCAAAGGCTGCTCTCAGAGCTGCTCCATTAGACCCTGCCTTCACTGGATCAAAACCCCACAATCCCAAGCCAACGCCACCTTCTTCCTCGCAAAATTCTACGGCCGCGCCGGCCTCGTCAACCTCATCAATGCCGGCCCCGACCATCTCCGACCAGCTATTTTTAAATCTTTGCTGTTCGAGGCGTGTGGCCGGATTGTGAACCCGATTTTCGGGTCGGCCGGATTGCTGTGGTCCGGGAGCTGGCAGCTCTGCCAGGATGCCGTGGAGGCTGTTCTGAAAGGCGCGCCGATTCTCCCGGTTTCTTCCGAAACGGCGGCGTCGCACATGGGACCACCGTTGAAGGGCTGGGACATCCGCCACGTGTCAAAAAACCAGGGCTCTGCTGCTTCCGCCCTCCGGAAAATCAAGACGCGGCGGCGTTTCAAGCGCGCGGCGGCGGCGGCCACCAAGACGAAGCCGAAGGAGGAGCCGTCGGTGATCGAGTTCGGATTCGACGACCCAACCCGGATGGTAGCGGAGCCCCGAGGTTTGAAGTTGGAGGTTGAAAATTGGGGGGGGCGTGAGTCGGAGCTGAGTCAGCGGTCGGATAAGGACTGCGGCAGCGACGACGCTGCCGAGTGCTTGTCGGTGGAGACTGTGGACGCTTCTTCGGTGGGCCAGGGTGATGTCGTGGAGTTGGAACTTACGTTGGGGCTTGGGTACAGTCGGATGCTGACGTGA 756 60.45 MRMSCNGCRVLRKGCSQSCSIRPCLHWIKTPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGWDIRHVSKNQGSAASALRKIKTRRRFKRAAAAATKTKPKEEPSVIEFGFDDPTRMVAEPRGLKLEVENWGGRESELSQRSDKDCGSDDAAECLSVETVDASSVGQGDVVELELTLGLGYSRMLT 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2484246 2485623 - MC06g0310 Mch6g0374 689821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0374 251 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 244 - GO:0010468(PANTHER)
Mch6g0374 251 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Mch6g0374 251 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1294 Mch-Chr8:9423086 Mch6g0374 Mch-Chr6:2484246 5.25E-88 transposed
Mch6g0374 Mch-Chr6:2484246 Mch9g1958 Mch-Chr9:20983539 9.53E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43516 PF03195 LOB 6.40E-22 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0374 - - - 0.0