Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0383 ATGGCGGATTTCTCTCCCGAGTTGCAGAGCTTCAAGCCCTCCTCCTTCTCCTTCCCTGATTTCATGGATCCTAATTTGGAGCTAATGGGTCACTATTCCGCTTCAAATCCCGCTCCTCCATCTCTCAATTTCAATAACCTCTTGCCCTTTTCAAATGACATGTTTTTCCCTCACCAGCCCCCACCGGAGCTCCTCCACGGCAACTTTCCTCTGCCTCCTCCACCTCCCATCTCCGCACCACAGAACGAATCATTCCACGACTTGAAGAAGAGAAAATCATCCATGGAGTTCTCCGAGAGCACCTCTGGAATCTCCACTCCCCAAGCCTCTGAAAATGGGTTCAAGTCAAAAAATAGCTCGGGAAGAGGGAAGAGATTGAAAAGCGTTGAGAAAGAAGAGGAGAAGTCAGCGAGAGAAGTGGTTCATGTCAGAGCCAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGGATGGCAGTCATGTTGGATGAGATAATCAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTGTCCATGAAGCTTGCTGCAGCCAGCTCTTTCTATGACTTCAACTCCGAGGCAGATGCCATATCAAAATTACAGAGGGCAAAGGCAAATGAAGCAAAAGAGTTGGAGAGATTGATGAGAGGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 786 47.46 MADFSPELQSFKPSSFSFPDFMDPNLELMGHYSASNPAPPSLNFNNLLPFSNDMFFPHQPPPELLHGNFPLPPPPPISAPQNESFHDLKKRKSSMEFSESTSGISTPQASENGFKSKNSSGRGKRLKSVEKEEEKSAREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADAISKLQRAKANEAKELERLMRGEGYGGVACFHSTLPL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2538331 2540599 - MC06g0319 Mch6g0383 689830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0383 261 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Mch6g0383 261 FunFam transcription factor BEE 3-like 146 217 - -
Mch6g0383 261 Coils Coil 226 246 - -
Mch6g0383 261 CDD bHLH_AtBPE_like 139 224 - -
Mch6g0383 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Mch6g0383 261 Gene3D - 145 217 IPR036638 GO:0046983(InterPro)
Mch6g0383 261 MobiDBLite consensus disorder prediction 63 80 - -
Mch6g0383 261 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
Mch6g0383 261 MobiDBLite consensus disorder prediction 123 155 - -
Mch6g0383 261 MobiDBLite consensus disorder prediction 59 155 - -
Mch6g0383 261 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 234 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch6g0383 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Mch6g0383 261 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0383 Mch-Chr6:2538331 Mch9g2038 Mch-Chr9:21596402 5.26E-30 dispersed
Mch8g1269 Mch-Chr8:9196030 Mch6g0383 Mch-Chr6:2538331 1.14E-41 transposed
Mch3g1629 Mch-Chr3:18086513 Mch6g0383 Mch-Chr6:2538331 6.45E-74 wgd
Mch4g1336 Mch-Chr4:16629400 Mch6g0383 Mch-Chr6:2538331 1.04E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43518 PF00010 HLH 4.40E-05 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0383 - - - 0.0