Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g0390 | ATGGCCACGCCGTTGACAGGGCTACAGCACCGGGACGGTGGCGGAGGAGTGGCTTTTTTGTCTAATTCCGTCAATAAAATTGATTCCGCCTCGTCGCCGAATGATTGCTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCATAAAGCAATTCGCAATGAGCTCGATACGCTTCACCGGCTCGCCATGGCCTTCGCCACCGGGAAGAGAGCCGATATTCGCCCGCTATTTGAACGATACCATTTTCTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTGTTTGATCATCTTTTTGAGCTTCTTAATTCTAATACACAAAATGATGAAAGCTTCCCAAGGGAATTAGCGTCCTGCACTGGTGCCCTGAAGACATCTGTGAGCCAGCACATGGCCAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCCTCTCTGGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTATATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTATTTCACCCGATGAATTTCAGGATCTACAGAAATGTTTAGTCAAGGTAGTCCCCGAGGAAAAGCTTCTTCAACAGGTCATATTTACTTGGATGGAAGCAAGAAGTTGTGACAATGTAACTAGAAGTTGCTTTGATGATTCTCAAGTTGCATATTGTACGGATCCAACTTCTGATACATCAAATCATCAAACGGAAAATGTAAACTGTGCTTGTGAATTGACCAGCCATGGGAAAAGAAAATATTTGGAGTCAAGTTCTGATGCTTCTGATTATGTGGTAACTCATCCAATCAATGAAATTCTGCTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAGCTTTCTGGGAATTTTAGTAATCTATCGGCTTTTAACGAGAGGCTTCAATTCATTGCCGAAGTTTGCATTTATCATAGTATTGCCGAGGAAAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGCTCTCATGCTGATCAAATAATGGATACCATTATGAGGCACTTCCATAACGAGGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAAAGACAACGGGAACTATTGTATCAAAGCTTGTGCATGATGTCTTTGAAATTGATTGAACGTGTCTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATTTTCTCAAGAACGTGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCATGCAAGGCCCGTAATAATGGTTTATGCTTGTCTTCAAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACCGACATTGAAGAAGACATTGTTCCACCATTCTGCTCATGTGCCCCTGCATTCATAGCAAGGGAAGGTCAAAAATCAGATCCCAAAACTAATGTTAAGAGGCCAACCATACGAAATGTTCCCATGCCATGCAAAAATTGTGACGGCCGTATTGCTCCAGATACTGCTGATGTCCGGCAACAATGCTGCACTGATCAGTCCTGCCGGGTCCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTGAGTTCTATCTTCACAACCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTAAATTCCAGCCTTTTTTCATGGGAAACTGATAGTGCCTCCTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGAACATTTCTCAGACAATTTATTGGAAGATTTCGCCTTCTGTGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCCGCATTGGAATCCAAAGAGACATTGCATAATGTAAGTCACTCGTATACACTAGACCACAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCCGAGATTTCACTCCTCCATGAAAGTCTGCATGAGGTTCCCTTGGATGAGAACTTTTCTAGAAGTGATGTTGGCTCTGTTAATGTGACGGAGAACGAATGTAATAGAAAGTACCATGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACGCTAGATCAGCATATTTTTAGGGAAGAACTTGAACTGTGGCCACTGTTTGGAAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACCACTGGTGCTGAAGTTCTCCAGTCAATGTTGCCGTGGGTAACAGCTGCACTTACTCAGGACGAACAGAACACACTGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTTGAGAGGGACTACTCCCTCTTCTTTAGATGGTGAAACATCGGAAGCTGTTATTGCTGAAAAAGATTCTGGGCTTATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCCCAAGCAAATATAGAAGATAGTTCCAATGGTGAAGATGTAACAGGACGATCGCCATCTTTTCGCTGTGCTGAGAAAAAAGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGCGGAAAGTTATTTACTTGTCGCTTTTGTCACGATAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACGATTCAAGCAGTTGGGCCAAAATGCATAACACCTTCCTGCAATGGATTGTCAATGGCAAAGTACTACTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTCGGAATTGATTTTTTCCATTGCATGATCTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCCTATTTACATCCAGTGCAACCGTCAGACCACTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATACACTTGCAGCCATTATACATGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTTGATGCCTTGTTGGCTGCCGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATACTGTGCAATGACTGTGAGCGGAAAGGGACATCGCTCTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCTTACAACACTCGGGTAATCAGGAATGAGGCCACACATGCTGACTGCCCCTCTTACAATCAATGA | 3756 | 42.81 | MATPLTGLQHRDGGGGVAFLSNSVNKIDSASSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGKRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSISPDEFQDLQKCLVKVVPEEKLLQQVIFTWMEARSCDNVTRSCFDDSQVAYCTDPTSDTSNHQTENVNCACELTSHGKRKYLESSSDASDYVVTHPINEILLWHNAIKRELNDIAEEARKIQLSGNFSNLSAFNERLQFIAEVCIYHSIAEEKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIMRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMSLKLIERVLPWLVGSLKEDEARDFLKNVQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVPPFCSCAPAFIAREGQKSDPKTNVKRPTIRNVPMPCKNCDGRIAPDTADVRQQCCTDQSCRVPALGVNSKNLGLSSIFTTKSMRSLSPSSCAPSLNSSLFSWETDSASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDENFSRSDVGSVNVTENECNRKYHELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTAALTQDEQNTLMDTWKQATKNTMFNEWLNECLRGTTPSSLDGETSEAVIAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANIEDSSNGEDVTGRSPSFRCAEKKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQAVGPKCITPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSLFHWLYHKCGFCGSYNTRVIRNEATHADCPSYNQ | 1251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2568298 | 2579141 | - | MC06g0325 | Mch6g0390 | 689837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g0390 | 1251 | Pfam | Ring finger domain | 1130 | 1172 | IPR001841 | - | |
Mch6g0390 | 1251 | FunFam | Zinc finger protein-related isoform 1 | 1126 | 1175 | - | - | |
Mch6g0390 | 1251 | Pfam | CHY zinc finger | 1002 | 1070 | IPR008913 | GO:0008270(InterPro) | |
Mch6g0390 | 1251 | CDD | Hr-like | 657 | 817 | - | - | |
Mch6g0390 | 1251 | Pfam | Zinc-ribbon | 1178 | 1235 | IPR039512 | - | |
Mch6g0390 | 1251 | CDD | Hr-like | 310 | 438 | - | - | |
Mch6g0390 | 1251 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1067 | 1130 | IPR017921 | - | |
Mch6g0390 | 1251 | CDD | Hr-like | 48 | 174 | - | - | |
Mch6g0390 | 1251 | SUPERFAMILY | Zinc hairpin stack | 1068 | 1124 | IPR037275 | - | |
Mch6g0390 | 1251 | CDD | RING-H2_Pirh2-like | 1130 | 1173 | - | - | |
Mch6g0390 | 1251 | SMART | ring_2 | 1131 | 1172 | IPR001841 | - | |
Mch6g0390 | 1251 | ProSiteProfiles | Zinc finger CHY-type profile. | 995 | 1064 | IPR008913 | GO:0008270(InterPro) | |
Mch6g0390 | 1251 | Gene3D | nmb1532 protein domain like | 650 | 887 | - | - | |
Mch6g0390 | 1251 | Gene3D | - | 1202 | 1247 | - | - | |
Mch6g0390 | 1251 | SUPERFAMILY | CHY zinc finger-like | 996 | 1058 | IPR037274 | GO:0008270(InterPro) | |
Mch6g0390 | 1251 | SUPERFAMILY | RING/U-box | 1130 | 1176 | - | - | |
Mch6g0390 | 1251 | Gene3D | nmb1532 protein domain like | 311 | 456 | - | - | |
Mch6g0390 | 1251 | Gene3D | nmb1532 protein domain like | 43 | 193 | - | - | |
Mch6g0390 | 1251 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 690 | 1237 | - | - | |
Mch6g0390 | 1251 | Pfam | Hemerythrin HHE cation binding domain | 49 | 176 | IPR012312 | - | |
Mch6g0390 | 1251 | Pfam | Hemerythrin HHE cation binding domain | 307 | 440 | IPR012312 | - | |
Mch6g0390 | 1251 | Pfam | Hemerythrin HHE cation binding domain | 655 | 817 | IPR012312 | - | |
Mch6g0390 | 1251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1124 | 1175 | IPR013083 | - | |
Mch6g0390 | 1251 | ProSiteProfiles | Zinc finger RING-type profile. | 1131 | 1173 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g0204 | Mch-Chr6:1357557 | Mch6g0390 | Mch-Chr6:2568298 | 1.68E-250 | transposed | |
Mch6g0390 | Mch-Chr6:2568298 | Mch9g1941 | Mch-Chr9:20877995 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch6g0390 | K16276 | - | csv:101215023 | 2348.93 |