Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0390 ATGGCCACGCCGTTGACAGGGCTACAGCACCGGGACGGTGGCGGAGGAGTGGCTTTTTTGTCTAATTCCGTCAATAAAATTGATTCCGCCTCGTCGCCGAATGATTGCTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCATAAAGCAATTCGCAATGAGCTCGATACGCTTCACCGGCTCGCCATGGCCTTCGCCACCGGGAAGAGAGCCGATATTCGCCCGCTATTTGAACGATACCATTTTCTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTGTTTGATCATCTTTTTGAGCTTCTTAATTCTAATACACAAAATGATGAAAGCTTCCCAAGGGAATTAGCGTCCTGCACTGGTGCCCTGAAGACATCTGTGAGCCAGCACATGGCCAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCCTCTCTGGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTATATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTATTTCACCCGATGAATTTCAGGATCTACAGAAATGTTTAGTCAAGGTAGTCCCCGAGGAAAAGCTTCTTCAACAGGTCATATTTACTTGGATGGAAGCAAGAAGTTGTGACAATGTAACTAGAAGTTGCTTTGATGATTCTCAAGTTGCATATTGTACGGATCCAACTTCTGATACATCAAATCATCAAACGGAAAATGTAAACTGTGCTTGTGAATTGACCAGCCATGGGAAAAGAAAATATTTGGAGTCAAGTTCTGATGCTTCTGATTATGTGGTAACTCATCCAATCAATGAAATTCTGCTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAGCTTTCTGGGAATTTTAGTAATCTATCGGCTTTTAACGAGAGGCTTCAATTCATTGCCGAAGTTTGCATTTATCATAGTATTGCCGAGGAAAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGCTCTCATGCTGATCAAATAATGGATACCATTATGAGGCACTTCCATAACGAGGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAAAGACAACGGGAACTATTGTATCAAAGCTTGTGCATGATGTCTTTGAAATTGATTGAACGTGTCTTGCCATGGCTGGTAGGATCATTGAAAGAAGATGAAGCTAGAGATTTTCTCAAGAACGTGCAGTTGGCAGCTCCAGCTAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCATGCAAGGCCCGTAATAATGGTTTATGCTTGTCTTCAAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACCGACATTGAAGAAGACATTGTTCCACCATTCTGCTCATGTGCCCCTGCATTCATAGCAAGGGAAGGTCAAAAATCAGATCCCAAAACTAATGTTAAGAGGCCAACCATACGAAATGTTCCCATGCCATGCAAAAATTGTGACGGCCGTATTGCTCCAGATACTGCTGATGTCCGGCAACAATGCTGCACTGATCAGTCCTGCCGGGTCCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTGAGTTCTATCTTCACAACCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTAAATTCCAGCCTTTTTTCATGGGAAACTGATAGTGCCTCCTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGAACATTTCTCAGACAATTTATTGGAAGATTTCGCCTTCTGTGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCCGCATTGGAATCCAAAGAGACATTGCATAATGTAAGTCACTCGTATACACTAGACCACAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCCGAGATTTCACTCCTCCATGAAAGTCTGCATGAGGTTCCCTTGGATGAGAACTTTTCTAGAAGTGATGTTGGCTCTGTTAATGTGACGGAGAACGAATGTAATAGAAAGTACCATGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACGCTAGATCAGCATATTTTTAGGGAAGAACTTGAACTGTGGCCACTGTTTGGAAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACCACTGGTGCTGAAGTTCTCCAGTCAATGTTGCCGTGGGTAACAGCTGCACTTACTCAGGACGAACAGAACACACTGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTTGAGAGGGACTACTCCCTCTTCTTTAGATGGTGAAACATCGGAAGCTGTTATTGCTGAAAAAGATTCTGGGCTTATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCCCAAGCAAATATAGAAGATAGTTCCAATGGTGAAGATGTAACAGGACGATCGCCATCTTTTCGCTGTGCTGAGAAAAAAGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGCGGAAAGTTATTTACTTGTCGCTTTTGTCACGATAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACGATTCAAGCAGTTGGGCCAAAATGCATAACACCTTCCTGCAATGGATTGTCAATGGCAAAGTACTACTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTCGGAATTGATTTTTTCCATTGCATGATCTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCCTATTTACATCCAGTGCAACCGTCAGACCACTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATACACTTGCAGCCATTATACATGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTTGATGCCTTGTTGGCTGCCGAGGAGCTGCCAGAAGAGTACAGGGATCGTTGCCAGGACATACTGTGCAATGACTGTGAGCGGAAAGGGACATCGCTCTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGATCTTACAACACTCGGGTAATCAGGAATGAGGCCACACATGCTGACTGCCCCTCTTACAATCAATGA 3756 42.81 MATPLTGLQHRDGGGGVAFLSNSVNKIDSASSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGKRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSISPDEFQDLQKCLVKVVPEEKLLQQVIFTWMEARSCDNVTRSCFDDSQVAYCTDPTSDTSNHQTENVNCACELTSHGKRKYLESSSDASDYVVTHPINEILLWHNAIKRELNDIAEEARKIQLSGNFSNLSAFNERLQFIAEVCIYHSIAEEKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIMRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMSLKLIERVLPWLVGSLKEDEARDFLKNVQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVPPFCSCAPAFIAREGQKSDPKTNVKRPTIRNVPMPCKNCDGRIAPDTADVRQQCCTDQSCRVPALGVNSKNLGLSSIFTTKSMRSLSPSSCAPSLNSSLFSWETDSASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDENFSRSDVGSVNVTENECNRKYHELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTAALTQDEQNTLMDTWKQATKNTMFNEWLNECLRGTTPSSLDGETSEAVIAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANIEDSSNGEDVTGRSPSFRCAEKKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQAVGPKCITPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSLFHWLYHKCGFCGSYNTRVIRNEATHADCPSYNQ 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2568298 2579141 - MC06g0325 Mch6g0390 689837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0390 1251 Pfam Ring finger domain 1130 1172 IPR001841 -
Mch6g0390 1251 FunFam Zinc finger protein-related isoform 1 1126 1175 - -
Mch6g0390 1251 Pfam CHY zinc finger 1002 1070 IPR008913 GO:0008270(InterPro)
Mch6g0390 1251 CDD Hr-like 657 817 - -
Mch6g0390 1251 Pfam Zinc-ribbon 1178 1235 IPR039512 -
Mch6g0390 1251 CDD Hr-like 310 438 - -
Mch6g0390 1251 ProSiteProfiles Zinc finger CTCHY-type profile. 1067 1130 IPR017921 -
Mch6g0390 1251 CDD Hr-like 48 174 - -
Mch6g0390 1251 SUPERFAMILY Zinc hairpin stack 1068 1124 IPR037275 -
Mch6g0390 1251 CDD RING-H2_Pirh2-like 1130 1173 - -
Mch6g0390 1251 SMART ring_2 1131 1172 IPR001841 -
Mch6g0390 1251 ProSiteProfiles Zinc finger CHY-type profile. 995 1064 IPR008913 GO:0008270(InterPro)
Mch6g0390 1251 Gene3D nmb1532 protein domain like 650 887 - -
Mch6g0390 1251 Gene3D - 1202 1247 - -
Mch6g0390 1251 SUPERFAMILY CHY zinc finger-like 996 1058 IPR037274 GO:0008270(InterPro)
Mch6g0390 1251 SUPERFAMILY RING/U-box 1130 1176 - -
Mch6g0390 1251 Gene3D nmb1532 protein domain like 311 456 - -
Mch6g0390 1251 Gene3D nmb1532 protein domain like 43 193 - -
Mch6g0390 1251 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 690 1237 - -
Mch6g0390 1251 Pfam Hemerythrin HHE cation binding domain 49 176 IPR012312 -
Mch6g0390 1251 Pfam Hemerythrin HHE cation binding domain 307 440 IPR012312 -
Mch6g0390 1251 Pfam Hemerythrin HHE cation binding domain 655 817 IPR012312 -
Mch6g0390 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1124 1175 IPR013083 -
Mch6g0390 1251 ProSiteProfiles Zinc finger RING-type profile. 1131 1173 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0204 Mch-Chr6:1357557 Mch6g0390 Mch-Chr6:2568298 1.68E-250 transposed
Mch6g0390 Mch-Chr6:2568298 Mch9g1941 Mch-Chr9:20877995 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0390 K16276 - csv:101215023 2348.93