Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0407 ATGTCTGAGCTCGATCCATCAAAGAAAGTAGCCGATAGATATCTAAAGCGCGAGGTTCTCGGGGAGGGTACCTATGGTGTTGTATTTAAAGCCATTGATACTCAGACTGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACAGCTCTTCGAGAAATCAAGCTGCTAAAAGAGCTCAAGGATCCAAATATAATTGAGTTAATTGATGCATTTCCTCACAAAGGAAATTTGCATCTTGTATTTGAATTTATGGAGACGGACCTCGAAGCTGTGATACGTGATCGGAACATATTTCTTTCCCCAGCTGACATAAAATCATACCTTCAGATGACGCTGAAAGGCCTTGCTTTTTGCCACAAAAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCAAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTCGGATATTTGGGAGCCCAGATCGCAGATTTACTCACCAGGTTTTTGCTCGATGGTACAGAGCACCTGAGCTATTGTTTGGCACTAAGCAATATGGTTCTGCAGTGGATGTATGGGCTGCAGCTTGTATTTTTGCTGAACTACTCCTCCGTCGGCCTTTTCTTCAGGGTTCGAGCGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCTACCCCTTCTCAGTGGCCTGATATGCTGTATCTGCCTGATTATGTGGAGTTCCAATATGTTCCTGCACCTCCTCTTCGATCATTGTTCCCTATAGCTAGTGATGACACACTGGATCTCCTATCGAAGATGTTTGCTTATGATCCGAAATCTAGGATTTCCATTCAGCAAGCATTGGAGCACAGGTACTTCACATCTGCACCGCTCCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCGAAGCGTGAACCTGTGAACTCTAGAGTCTCGGACTTAAATTCAAATGAGGGTCCCATTGTCCTCTCACCCCCAAGGAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGGTTTTGAAGGAAATGCACATAGAATTGATAAGCATGATGACCATGTTAATGAGTTGCGAGAGGTAGCTGCTGAAAACACAAGCAAGAATGAACCAGTGCCAATGTCATTAGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACAATCAACAGTGCTGATAGATCACATCTGAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1251 42.61 MSELDPSKKVADRYLKREVLGEGTYGVVFKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPIASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPLPTDPSKLPRPTSKREPVNSRVSDLNSNEGPIVLSPPRKSRRVMPEREGFEGNAHRIDKHDDHVNELREVAAENTSKNEPVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2693329 2698323 - MC06g_new0070 Mch6g0407 689854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0407 416 MobiDBLite consensus disorder prediction 369 405 - -
Mch6g0407 416 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Mch6g0407 416 MobiDBLite consensus disorder prediction 314 328 - -
Mch6g0407 416 PANTHER CELL DIVISION PROTEIN KINASE 14 294 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Mch6g0407 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0407 416 MobiDBLite consensus disorder prediction 296 342 - -
Mch6g0407 416 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Mch6g0407 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Mch6g0407 416 SMART serkin_6 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0407 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Mch6g0407 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524(InterPro)
Mch6g0407 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0407 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Mch6g0407 416 FunFam Cyclin-dependent kinase D-1 5 94 - -
Mch6g0407 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0407 Mch-Chr6:2693329 Mch9g1849 Mch-Chr9:20279464 1.30E-87 dispersed
Mch6g0407 Mch-Chr6:2693329 Mch8g0091 Mch-Chr8:506886 3.20E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77461 PF00069 Pkinase 1.20E-71 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0407 K02202 - csv:101217645 795.808