Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0411 ATGTCTCGCCGCAGCCATAACGAAGGCGGTGACCAGGAGCTCTCCACCGGCGAGGAAGACGATGAAGATGATGTGTTTGATGAGGACATGGAAGCCCTCCGGCGAGCCTGTAGGCTTGTTGGAGCTAATCCCGAAGAGTATAATAATCCTCCCTTGTCTCCTACCGCCGGAGCTGGCTCGTTCGGCGGTAGCAAACCTGGCTCTGATTCTGATGATGTTGATGATCTCGAACTTGTTCGGAATATACGGAACCGGTTCTCGATTGCGGCCGATGATGAGGACCAGGCTTTGTCTCTGCATCCGTTGAGTACTCTCCCACCGGTGTCGCCGGACGAGGAGGAGGACGATTTCGAGACGCTTCGCGCGATTCAGCGGCGGTTTTCGGCGTATGAAAGTGATGCTTTGAGCAATAATCTCGATCAGTCTTGTGACTTTGGTGGGCCTCTAGAGATGGATTCCAACGAAACAGATGTTGGGAGACAGACTTCCTCAGGAAGGTCGTCTATGCTAGCCCTTGAAAAGGGAAATTTGCCTAAGGCTGCATTGGCATTTATTGATGCAATCAAGAAGAATAGGTCTCAGCAGAAGTTTATTCGAAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTTAGACAACGTTTCAAAATTCTCAAAGATTTCCAGAGTTCATGTAGAAGGAGAACAGGTTATCAACTGTCTCAGATGATTGATCCTCGAGTCCAGTTAATTTCAGCACAAAAACCACAGACTAAGGATTCATCAAAGAAGGACAAACAGTTATCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGACAAAGTTTCCACTTTCAGTAAATCGAAAAAAATGGTCCAATGTAGAAAGGGAGAATCTTGGGAAGGGAATAAGACAGCAATTTCAAGAAATGGTTCTTCAAATTTCAATGGATCAAATCAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTGGATAACATTTTTGCATCAATAAAAGACCTTGACATTACTCCTGAGAGGATTAGGGAATTTCTGCCAAAAGTAAATTGGGACAAATTGGCTTCCTTTTATCTTGGGGGTCGCTCAGGTGCAGAATGTGAAGCCAGGTGGTTGAATTTTGAAGATCCTCTAATTAATCGGAATCCATGGTCTACAAGTGAGGATAAGAATCTTTTGCTTACTATCCAACAGAAAGGGCTGAATAACTGGATTAACATAGCAGTTTCATTGGGTACGAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTCCGATCTGCTGTTGCCGTTCTTGGTGTAGGAGATTGGCAGGCAATAGCTTCTACTTTGGAAGGACGAGCTGGTACACAGTGCTCTAATAGATGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCGCGTTCACTCCAGATGAAGACAATCGCTTGAAAATTGCCGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTGTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAAGTGTGAATGGACAGAAGAGGAGGATTTAAGGCTCGAAATAGCAATTCAGGAGCATGGATATAGCTGGACAAAGGTAGCTGCATGTGTGCCTTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTCCCCAATGAAGTTCCCTTGCTCCAGGAAGCTAGAAGGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGAGAATCAGAGCGTCCTGCTTTAGGTCCTACTGACTTTCGACCTATACCCAATACAAATTTATTATGTAATGCGGATGATCCAAATCCTGCCCCAAAAAGAAATGTCAAGCCGAGGACACGAGTGCCAAGGAAGGAAAAGAATGCTACTGGCGATGCTCCAAAGAGGAGGAAATCAAATAACCATAGCAATCAAGCTAATGGAGCAACTGAGCAGGTATCTAAAAAACCTCAAAGAAGACAAAATAGAAATGGAGCTTATACTGCTAAGAGGAAAGGGGTTCTGGAGCCACGTCCTAACAATGAGAAATGTGCTGAACAAAATTTGGAAACTGAGAGCCTCGAGGTGCAGCTGAATAGTAGCGTATCAGGGAGGACCAACAGTGAGTGCCCCGAGATTGTTTATGAGAATGGTATGGAGGAATGTGAGAACAAAGTGGCAGAGAAGCTTTCTAAAAGTGATTTATTCTTTTCAGAACAGGAAGAATGTCAGAACTCGACAGGGTCTTCTGGAGTGTCAGTATTGTCAGAAATGATGAACGACATGGACGAGTATAATCCCTCTATCCTTCCAGACACAGCACCGTTGGCTTGTACTACTGGGGATGACGATATAACGGAAAGGAAGGACACAAGGGTTGCAGACACGGATCTGGTTGACAGTAACAGTTTCTCGTTACCGCATGGTTGCTTAGGACTCAGGACTAATGACAGTGAAGGCGTCGATAGCTGTTCTGTCGGTGAAACTACAGATAAAAGCGATATGGTTTATAAGCACCAAGGTAGAAGGAGGAGAACTAATCAACCAAAGAAGGAGCTGGAGAGATCAGCGAACAAGGAGCTTCATCCTCATAACCAACCAAAGAAGCGAAAGCATAACAGCACATATACAAGTGAGTCGGGAACATTGGAGCCAGTCGAAGAAGCAGATGACTGCACTCTCCAAGGCTTTCTGCAAAAGAAATTGAAGAAGACAACCACTCATAAAAGGAAATTTGATGGCGGTTCTAGCGATAAACTAGAAGTTGAAAGCAATGGTAATGATACTACTATCGCCTCGTTTCTCAAGAATATATCGAAGAAAAAGAAGCATAAAAGCTCCTAA 2967 43.82 MSRRSHNEGGDQELSTGEEDDEDDVFDEDMEALRRACRLVGANPEEYNNPPLSPTAGAGSFGGSKPGSDSDDVDDLELVRNIRNRFSIAADDEDQALSLHPLSTLPPVSPDEEEDDFETLRAIQRRFSAYESDALSNNLDQSCDFGGPLEMDSNETDVGRQTSSGRSSMLALEKGNLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRQRFKILKDFQSSCRRRTGYQLSQMIDPRVQLISAQKPQTKDSSKKDKQLSAMYYGPAENSHVACYRMALTKFPLSVNRKKWSNVERENLGKGIRQQFQEMVLQISMDQISGLQGFSADSDDLDNIFASIKDLDITPERIREFLPKVNWDKLASFYLGGRSGAECEARWLNFEDPLINRNPWSTSEDKNLLLTIQQKGLNNWINIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAVLGVGDWQAIASTLEGRAGTQCSNRWKKSLDPARTKRGAFTPDEDNRLKIAVLLFGPKNWNKKAEFVPGRNQVQCRERWFNCLDPSLRKCEWTEEEDLRLEIAIQEHGYSWTKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARRIQKAALISNFVDRESERPALGPTDFRPIPNTNLLCNADDPNPAPKRNVKPRTRVPRKEKNATGDAPKRRKSNNHSNQANGATEQVSKKPQRRQNRNGAYTAKRKGVLEPRPNNEKCAEQNLETESLEVQLNSSVSGRTNSECPEIVYENGMEECENKVAEKLSKSDLFFSEQEECQNSTGSSGVSVLSEMMNDMDEYNPSILPDTAPLACTTGDDDITERKDTRVADTDLVDSNSFSLPHGCLGLRTNDSEGVDSCSVGETTDKSDMVYKHQGRRRRTNQPKKELERSANKELHPHNQPKKRKHNSTYTSESGTLEPVEEADDCTLQGFLQKKLKKTTTHKRKFDGGSSDKLEVESNGNDTTIASFLKNISKKKKHKSS 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2719219 2727645 - MC06g0340 Mch6g0411 689858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0411 988 Gene3D - 497 551 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 944 970 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 41 73 - -
Mch6g0411 988 CDD SANT 449 493 IPR001005 -
Mch6g0411 988 CDD SANT 554 597 IPR001005 -
Mch6g0411 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 547 601 IPR017930 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 500 546 IPR001005 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 447 491 IPR001005 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 553 596 IPR001005 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 394 439 IPR001005 -
Mch6g0411 988 MobiDBLite consensus disorder prediction 14 28 - -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 547 597 IPR001005 -
Mch6g0411 988 SMART sant 499 548 IPR001005 -
Mch6g0411 988 SMART sant 446 495 IPR001005 -
Mch6g0411 988 SMART sant 551 599 IPR001005 -
Mch6g0411 988 SMART sant 293 390 IPR001005 -
Mch6g0411 988 SMART sant 393 443 IPR001005 -
Mch6g0411 988 CDD SANT 502 544 IPR001005 -
Mch6g0411 988 CDD SANT 396 441 IPR001005 -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 389 441 IPR001005 -
Mch6g0411 988 Gene3D - 391 441 - -
Mch6g0411 988 Gene3D - 554 600 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 625 732 - -
Mch6g0411 988 Gene3D - 446 496 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 663 680 - -
Mch6g0411 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 499 546 IPR017930 -
Mch6g0411 988 MobiDBLite consensus disorder prediction 873 904 - -
Mch6g0411 988 SUPERFAMILY Homeodomain-like 497 593 IPR009057 -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 442 493 IPR001005 -
Mch6g0411 988 SUPERFAMILY Homeodomain-like 370 438 IPR009057 -
Mch6g0411 988 MobiDBLite consensus disorder prediction 858 931 - -
Mch6g0411 988 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 13 987 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Mch6g0411 988 MobiDBLite consensus disorder prediction 1 28 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 716 730 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 681 705 - -
Mch6g0411 988 SUPERFAMILY Homeodomain-like 426 496 IPR009057 -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 495 546 IPR001005 -
Mch6g0411 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 442 497 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0411 Mch-Chr6:2719219 Mch4g0196 Mch-Chr4:1304013 8.65E-13 dispersed
Mch6g0411 Mch-Chr6:2719219 Mch6g0147 Mch-Chr6:932961 4.01E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43520 PF00249 Myb_DNA-binding 8.80E-10 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0411 K09422 - csv:101216287 1300.8