Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0411 ATGTCTCGCCGCAGCCATAACGAAGGCGGTGACCAGGAGCTCTCCACCGGCGAGGAAGACGATGAAGATGATGTGTTTGATGAGGACATGGAAGCCCTCCGGCGAGCCTGTAGGCTTGTTGGAGCTAATCCCGAAGAGTATAATAATCCTCCCTTGTCTCCTACCGCCGGAGCTGGCTCGTTCGGCGGTAGCAAACCTGGCTCTGATTCTGATGATGTTGATGATCTCGAACTTGTTCGGAATATACGGAACCGGTTCTCGATTGCGGCCGATGATGAGGACCAGGCTTTGTCTCTGCATCCGTTGAGTACTCTCCCACCGGTGTCGCCGGACGAGGAGGAGGACGATTTCGAGACGCTTCGCGCGATTCAGCGGCGGTTTTCGGCGTATGAAAGTGATGCTTTGAGCAATAATCTCGATCAGTCTTGTGACTTTGGTGGGCCTCTAGAGATGGATTCCAACGAAACAGATGTTGGGAGACAGACTTCCTCAGGAAGGTCGTCTATGCTAGCCCTTGAAAAGGGAAATTTGCCTAAGGCTGCATTGGCATTTATTGATGCAATCAAGAAGAATAGGTCTCAGCAGAAGTTTATTCGAAGTAAGATGATTCACCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTTAGACAACGTTTCAAAATTCTCAAAGATTTCCAGAGTTCATGTAGAAGGAGAACAGGTTATCAACTGTCTCAGATGATTGATCCTCGAGTCCAGTTAATTTCAGCACAAAAACCACAGACTAAGGATTCATCAAAGAAGGACAAACAGTTATCTGCAATGTATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGACAAAGTTTCCACTTTCAGTAAATCGAAAAAAATGGTCCAATGTAGAAAGGGAGAATCTTGGGAAGGGAATAAGACAGCAATTTCAAGAAATGGTTCTTCAAATTTCAATGGATCAAATCAGTGGGCTACAAGGATTTTCAGCAGATTCAGATGATCTGGATAACATTTTTGCATCAATAAAAGACCTTGACATTACTCCTGAGAGGATTAGGGAATTTCTGCCAAAAGTAAATTGGGACAAATTGGCTTCCTTTTATCTTGGGGGTCGCTCAGGTGCAGAATGTGAAGCCAGGTGGTTGAATTTTGAAGATCCTCTAATTAATCGGAATCCATGGTCTACAAGTGAGGATAAGAATCTTTTGCTTACTATCCAACAGAAAGGGCTGAATAACTGGATTAACATAGCAGTTTCATTGGGTACGAACAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGATGAGGATGATAAACTCCGATCTGCTGTTGCCGTTCTTGGTGTAGGAGATTGGCAGGCAATAGCTTCTACTTTGGAAGGACGAGCTGGTACACAGTGCTCTAATAGATGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGCGCGTTCACTCCAGATGAAGACAATCGCTTGAAAATTGCCGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTGTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAAGTGTGAATGGACAGAAGAGGAGGATTTAAGGCTCGAAATAGCAATTCAGGAGCATGGATATAGCTGGACAAAGGTAGCTGCATGTGTGCCTTCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTCCCCAATGAAGTTCCCTTGCTCCAGGAAGCTAGAAGGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGAGAATCAGAGCGTCCTGCTTTAGGTCCTACTGACTTTCGACCTATACCCAATACAAATTTATTATGTAATGCGGATGATCCAAATCCTGCCCCAAAAAGAAATGTCAAGCCGAGGACACGAGTGCCAAGGAAGGAAAAGAATGCTACTGGCGATGCTCCAAAGAGGAGGAAATCAAATAACCATAGCAATCAAGCTAATGGAGCAACTGAGCAGGTATCTAAAAAACCTCAAAGAAGACAAAATAGAAATGGAGCTTATACTGCTAAGAGGAAAGGGGTTCTGGAGCCACGTCCTAACAATGAGAAATGTGCTGAACAAAATTTGGAAACTGAGAGCCTCGAGGTGCAGCTGAATAGTAGCGTATCAGGGAGGACCAACAGTGAGTGCCCCGAGATTGTTTATGAGAATGGTATGGAGGAATGTGAGAACAAAGTGGCAGAGAAGCTTTCTAAAAGTGATTTATTCTTTTCAGAACAGGAAGAATGTCAGAACTCGACAGGGTCTTCTGGAGTGTCAGTATTGTCAGAAATGATGAACGACATGGACGAGTATAATCCCTCTATCCTTCCAGACACAGCACCGTTGGCTTGTACTACTGGGGATGACGATATAACGGAAAGGAAGGACACAAGGGTTGCAGACACGGATCTGGTTGACAGTAACAGTTTCTCGTTACCGCATGGTTGCTTAGGACTCAGGACTAATGACAGTGAAGGCGTCGATAGCTGTTCTGTCGGTGAAACTACAGATAAAAGCGATATGGTTTATAAGCACCAAGGTAGAAGGAGGAGAACTAATCAACCAAAGAAGGAGCTGGAGAGATCAGCGAACAAGGAGCTTCATCCTCATAACCAACCAAAGAAGCGAAAGCATAACAGCACATATACAAGTGAGTCGGGAACATTGGAGCCAGTCGAAGAAGCAGATGACTGCACTCTCCAAGGCTTTCTGCAAAAGAAATTGAAGAAGACAACCACTCATAAAAGGAAATTTGATGGCGGTTCTAGCGATAAACTAGAAGTTGAAAGCAATGGTAATGATACTACTATCGCCTCGTTTCTCAAGAATATATCGAAGAAAAAGAAGCATAAAAGCTCCTAA 2967 43.82 MSRRSHNEGGDQELSTGEEDDEDDVFDEDMEALRRACRLVGANPEEYNNPPLSPTAGAGSFGGSKPGSDSDDVDDLELVRNIRNRFSIAADDEDQALSLHPLSTLPPVSPDEEEDDFETLRAIQRRFSAYESDALSNNLDQSCDFGGPLEMDSNETDVGRQTSSGRSSMLALEKGNLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRQRFKILKDFQSSCRRRTGYQLSQMIDPRVQLISAQKPQTKDSSKKDKQLSAMYYGPAENSHVACYRMALTKFPLSVNRKKWSNVERENLGKGIRQQFQEMVLQISMDQISGLQGFSADSDDLDNIFASIKDLDITPERIREFLPKVNWDKLASFYLGGRSGAECEARWLNFEDPLINRNPWSTSEDKNLLLTIQQKGLNNWINIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRSAVAVLGVGDWQAIASTLEGRAGTQCSNRWKKSLDPARTKRGAFTPDEDNRLKIAVLLFGPKNWNKKAEFVPGRNQVQCRERWFNCLDPSLRKCEWTEEEDLRLEIAIQEHGYSWTKVAACVPSRTDNECRRRWKKLFPNEVPLLQEARRIQKAALISNFVDRESERPALGPTDFRPIPNTNLLCNADDPNPAPKRNVKPRTRVPRKEKNATGDAPKRRKSNNHSNQANGATEQVSKKPQRRQNRNGAYTAKRKGVLEPRPNNEKCAEQNLETESLEVQLNSSVSGRTNSECPEIVYENGMEECENKVAEKLSKSDLFFSEQEECQNSTGSSGVSVLSEMMNDMDEYNPSILPDTAPLACTTGDDDITERKDTRVADTDLVDSNSFSLPHGCLGLRTNDSEGVDSCSVGETTDKSDMVYKHQGRRRRTNQPKKELERSANKELHPHNQPKKRKHNSTYTSESGTLEPVEEADDCTLQGFLQKKLKKTTTHKRKFDGGSSDKLEVESNGNDTTIASFLKNISKKKKHKSS 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2719219 2727645 - MC06g0340 Mch6g0411 689858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0411 988 Gene3D - 497 551 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 944 970 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 41 73 - -
Mch6g0411 988 CDD SANT 449 493 IPR001005 -
Mch6g0411 988 CDD SANT 554 597 IPR001005 -
Mch6g0411 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 547 601 IPR017930 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 500 546 IPR001005 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 447 491 IPR001005 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 553 596 IPR001005 -
Mch6g0411 988 Pfam Myb-like DNA-binding domain 394 439 IPR001005 -
Mch6g0411 988 MobiDBLite consensus disorder prediction 14 28 - -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 547 597 IPR001005 -
Mch6g0411 988 SMART sant 499 548 IPR001005 -
Mch6g0411 988 SMART sant 446 495 IPR001005 -
Mch6g0411 988 SMART sant 551 599 IPR001005 -
Mch6g0411 988 SMART sant 293 390 IPR001005 -
Mch6g0411 988 SMART sant 393 443 IPR001005 -
Mch6g0411 988 CDD SANT 502 544 IPR001005 -
Mch6g0411 988 CDD SANT 396 441 IPR001005 -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 389 441 IPR001005 -
Mch6g0411 988 Gene3D - 391 441 - -
Mch6g0411 988 Gene3D - 554 600 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 625 732 - -
Mch6g0411 988 Gene3D - 446 496 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 663 680 - -
Mch6g0411 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 499 546 IPR017930 -
Mch6g0411 988 MobiDBLite consensus disorder prediction 873 904 - -
Mch6g0411 988 SUPERFAMILY Homeodomain-like 497 593 IPR009057 -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 442 493 IPR001005 -
Mch6g0411 988 SUPERFAMILY Homeodomain-like 370 438 IPR009057 -
Mch6g0411 988 MobiDBLite consensus disorder prediction 858 931 - -
Mch6g0411 988 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 13 987 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Mch6g0411 988 MobiDBLite consensus disorder prediction 1 28 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 716 730 - -
Mch6g0411 988 MobiDBLite consensus disorder prediction 681 705 - -
Mch6g0411 988 SUPERFAMILY Homeodomain-like 426 496 IPR009057 -
Mch6g0411 988 ProSiteProfiles Myb-like domain profile. 495 546 IPR001005 -
Mch6g0411 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 442 497 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0411 K09422 - - csv:101216287 1300.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0411 Mch-Chr6:2719219 Mch4g0196 Mch-Chr4:1304013 8.65E-13 dispersed
Mch6g0411 Mch-Chr6:2719219 Mch6g0147 Mch-Chr6:932961 4.01E-15 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0411 . 176 642 MYB-Related Transcription Factor Family AT3G18100 55.8 9.1e-152 534.3
Mch6g0411 . 176 642 MYB-Related Transcription Factor Family AT3G18100 55.8 9.1e-152 534.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43520 PF00249 Myb_DNA-binding 8.80E-10 CL0123 Mch TF