Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0415 ATGGCTGCAGCTGGTGATCAAGATATGGCACTTCACTCTCTTGGGTCTAAAGTTTCTGTGCTTTCAGATCATGAACCTGAAAAATGTGGCCATGTTAACAATAATGTTGGCAATCACCAACAAAGACCTTGCTTTGATCCTAATTCTCTTGTTTCTCCCAAGGCTGTGCCGCCGATTTCGGTGGCGGCTGAGGGCGATCAAGCTCTCCGCCGCCCTCGAGGGCGTCCGGCCGGCTCCAAAAACAAGCCTAAACCACCCATCATTGTCACCCGAGATAGCGCCAATGCTCTCCGCGCTCATGCCATCGAAGTCAGCTCTGGCTGTGACGTTAACGAGAGCCTATCCAACTTCGCGCGAAGGAAACAACGTGGCGTTTGTATTTTGAGCGGGAGTGGATGTGTCACCAACGTCACGCTCCGCCAGGCTGCCTCCTCAGGCGCCATCGTCACTCTTCACGGCCGGTTTGAGATTCTTTCATTGCTGGGATCAATCTTGCCGCCGCCAGCGCCGTCGGGGATCGCCGGGCTAACTATTTACTTAGCGGGCGCGCAAGGGCAGGTGGTCGGTGGAGTGGTGGTGGGTGCGCTCATTGCTTCCGGCCCCGTCGTGATCATGGCGGCAACGTTCATGAACGCAACATTTGACCGCCTGCCGTCGGATGACGACGAAGCCACCGCCGCCATGCAGAGCCAACACTACCAGAACGGGCGGAGCCACCACCACCTCGATGTTTCCGATCTGTACGGAGTGCCGCAGAACTTGATCACCAACACCACTCTTCCGCCGGACTTATACTCTTGGGCGGCGGCGGGCAGAACCATGTCGAAGACTTAG 834 56.71 MAAAGDQDMALHSLGSKVSVLSDHEPEKCGHVNNNVGNHQQRPCFDPNSLVSPKAVPPISVAAEGDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSLLGSILPPPAPSGIAGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDLYSWAAAGRTMSKT 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2752196 2753105 - MC06g_new0074 Mch6g0415 689862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0415 277 CDD DUF296 98 180 IPR005175 -
Mch6g0415 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Mch6g0415 277 MobiDBLite consensus disorder prediction 33 47 - -
Mch6g0415 277 MobiDBLite consensus disorder prediction 25 87 - -
Mch6g0415 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 224 - -
Mch6g0415 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 65 237 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch6g0415 277 FunFam AT-hook motif nuclear-localized protein 97 238 - -
Mch6g0415 277 ProSiteProfiles PPC domain profile profile. 94 231 IPR005175 -
Mch6g0415 277 Gene3D - 96 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0415 Mch-Chr6:2752196 Mch7g0752 Mch-Chr7:12143320 2.12E-74 dispersed
Mch6g0415 Mch-Chr6:2752196 Mch6g2578 Mch-Chr6:27638872 1.29E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0415 - - - 0.0