Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0417 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTCCAACGTCGCGCTTCGCATTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTAATTTTAGCCGTAATACACTTCCTCATCCCTCTGATTCTGATCACAATTGCCCCAATAATGGTGTTCACAATCCCCAAAACGGCAACCAGTTTTATCTGAGCGATTTGCGCGCCCAATCGTCCACTGCCCCCCTACGGAAACCCCTTCGGAAACGTCCCCAACAGGGAGAGGGAGAGGGAATTCCTCTTGAACATTTACCGGAAGAGGACGACGACGACGACCTTGATTACTCTGCCTTGAAGCTCATTAAAGTTCCGAAGCGGACCACTCACTTCAAATCTCCTCCTCCTCCTGCTTTCGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGCAAGCAGATATCAGGTTCAAGAAATAATTGGCAAGGGAAGCTATGGTGTGGTCGGTTCTGCCATTGATACCCATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTACGGTTGCTCCGTCATCCGGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGAAGAGAATTCAGAGATATTTATGTTGTTTTTGAGTTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAACGATGATCTCACTCCTGAGCACCATCAATTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTCTAGCTAATGCCGATTGCAAACTGAAAATATGTGATTTTGGGCTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTACGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAGCCACTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTGATGACTGATGTGCTTGGCACACCTTCTGCTGAGTCCATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCCGCCTGTTTCTCTCACACAAAAGTTCCCCAATGCGGATCCCTTGGCTCTCCGCTTACTTCAGCGCCTGCTTGCCTTTGATCCCAAAGATCGTCCTACAGCTGAAGAGGCATTAGCTGATCCTTATTTCCACGGTTTGGCCAACGTCGATCGGGAACCATCAACTCAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACGAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTGCAGGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGTGTTGATCGCTTCAAACGCCAGTTTGCACATCTGGAGGAACATTATGGCAAGGGTGAAAGAAGTTCTCCACTTCAAAGGCAGCATGCTTCATTGCCCAGGGAAAGAGTTTGTGCACCCAAAGATGAGGATGCTCAACACAATGATATAGAAGGAAGAAATGGTTCATATGTTGCTTCATCTCTTCAGAGTCCCCCAAGGTCACAGCAAGGGGATGGTTCGGAAAATGCAAACAGTAACGAACAAAATGGACCGAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTTAAACCAAGAAAAGACCTCGAGGAGGAACCGATTACGGAGACTAACGACGAGGCAGTTGATGGATTGTCTCATAAGGTTTCAGCCTTACATACTTGA 1953 44.14 MGSGTLVDGVRRWFQRRASHSSSSSSSSSSNFSRNTLPHPSDSDHNCPNNGVHNPQNGNQFYLSDLRAQSSTAPLRKPLRKRPQQGEGEGIPLEHLPEEDDDDDLDYSALKLIKVPKRTTHFKSPPPPAFALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKPPVSLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSSPLQRQHASLPRERVCAPKDEDAQHNDIEGRNGSYVASSLQSPPRSQQGDGSENANSNEQNGPNKANYSARSLLKSASISASKCIGVKPRKDLEEEPITETNDEAVDGLSHKVSALHT 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2759523 2765644 - MC06g_new0075 Mch6g0417 689864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0417 650 Gene3D Phosphorylase Kinase; domain 1 171 492 - -
Mch6g0417 650 ProSitePatterns MAP kinase signature. 190 293 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0417 650 MobiDBLite consensus disorder prediction 1 102 - -
Mch6g0417 650 FunFam Mitogen-activated protein kinase 470 492 - -
Mch6g0417 650 MobiDBLite consensus disorder prediction 616 650 - -
Mch6g0417 650 MobiDBLite consensus disorder prediction 526 603 - -
Mch6g0417 650 CDD STKc_TDY_MAPK 154 491 - -
Mch6g0417 650 MobiDBLite consensus disorder prediction 563 603 - -
Mch6g0417 650 FunFam Mitogen-activated protein kinase 241 469 - -
Mch6g0417 650 SMART serkin_6 155 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0417 650 Gene3D Transferase(Phosphotransferase) domain 1 241 469 - -
Mch6g0417 650 SUPERFAMILY Protein kinase-like (PK-like) 151 451 IPR011009 -
Mch6g0417 650 MobiDBLite consensus disorder prediction 16 71 - -
Mch6g0417 650 FunFam Mitogen-activated protein kinase 144 249 - -
Mch6g0417 650 ProSitePatterns Protein kinases ATP-binding region signature. 161 185 IPR017441 GO:0005524(InterPro)
Mch6g0417 650 ProSiteProfiles Protein kinase domain profile. 155 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0417 650 Pfam Protein kinase domain 155 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0417 650 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 152 487 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Mch6g0417 650 MobiDBLite consensus disorder prediction 544 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0417 Mch-Chr6:2759523 Mch7g1108 Mch-Chr7:15054923 2.40E-254 dispersed
Mch9g1264 Mch-Chr9:14505988 Mch6g0417 Mch-Chr6:2759523 3.27E-260 transposed
Mch3g1593 Mch-Chr3:17881862 Mch6g0417 Mch-Chr6:2759523 5.32E-258 wgd
Mch4g1404 Mch-Chr4:17517112 Mch6g0417 Mch-Chr6:2759523 1.19E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77462 PF00069 Pkinase 2.00E-68 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0417 - - - 0.0