Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0468 CCGCCTCCGCCGTTTGCCTCTGCTCCACCTCCTGAGGAGAAGCCGGTTTACGCTCCGTTCCGGCCGAGCATGGCGGTGGTGGTGGGCGTTCTAACCACCACGTTCTCCATCACGTTTCTTCTCCTTCTGTACGCGAAGCACTGCAAGCGTGGGAATGTGGTGGTGGTTGGTTACTCGAGGCGGCCCAATTCGATGGGCAGCGGCCCGAACCCGAGCTTCTCGGCGAGGAAGAACTCCGGCATCGACCAGGCGGTGATCGAGTCGCTCCCGATTTTCAGATTCGGGTCATTGAGCGGCCAGAAGGAGGGCCTCGAGTGCGCCGTTTGCCTCAACAGATTCGAGCCCACGGAGGTTCTGAGACTCCTCCCCAAATGCAAGCACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCCCACTCCACCTGCCCCCTCTGCCGCTACCGAGTTGACCCGGAGGACGTCCTCCTCGTCGAAGACGTCAATATTTTAGTCCACAATCAGGCGGCAGCGTCGGCGGGGGCGAATCAAATCTCCCCTCCGCCTCCGCCTCTGCCTCCGCCGCCGCCGCCGCGGGACTCCAAATCGAAGGACGTGGTGTTGAACTTGGAGCCGGGGAGAAGAAGCGGCGGCAAGGCGGAATCCGGGAGAGTCTCCGGGAGGCATTCCTCGGTGGGAGAAGAGAGAACCGGCGAATCAAGCTCCCGGGATCCGGCATTGTTCAGACGATCGCTAGACAGCTCGTCCGCCGCGCCGAGGAAGAGAACCGAAACGGTGGCCGTCGGGTGCTTCGATCGGCCACGGAAGGACGGGCTTCTGTTACCGGACGAGAAACCGAACCTGCAAAATCAGAATCAGAATCAGAACAGGTTCGAGCATCGGATCATAGTTTCGCCGAGGGGAAGGGCAGGGGAGGCCCAGCGGCAGAGATGGAGCGACGTACAAGCGTCGGATCTTCTGTATCTACGGTCAGAAATGATAATATCTGAGAGCCGCAGGTACTCGGCAGCGTCATTACCACCGGAATTAAAGCGACAGCGACGGATGGGGATG 1056 60.61 PPPPFASAPPPEEKPVYAPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNVVVVGYSRRPNSMGSGPNPSFSARKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNILVHNQAAASAGANQISPPPPPLPPPPPPRDSKSKDVVLNLEPGRRSGGKAESGRVSGRHSSVGEERTGESSSRDPALFRRSLDSSSAAPRKRTETVAVGCFDRPRKDGLLLPDEKPNLQNQNQNQNRFEHRIIVSPRGRAGEAQRQRWSDVQASDLLYLRSEMIISESRRYSAASLPPELKRQRRMGM 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3111139 3112225 + MC06g0390 Mch6g0468 689915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0468 352 CDD RING-H2_EL5-like 105 148 - -
Mch6g0468 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 155 IPR013083 -
Mch6g0468 352 Pfam Ring finger domain 105 148 IPR001841 -
Mch6g0468 352 SUPERFAMILY RING/U-box 87 153 - -
Mch6g0468 352 FunFam RING-H2 finger protein ATL43 81 155 - -
Mch6g0468 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 335 - -
Mch6g0468 352 SMART ring_2 106 147 IPR001841 -
Mch6g0468 352 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mch6g0468 352 MobiDBLite consensus disorder prediction 173 257 - -
Mch6g0468 352 MobiDBLite consensus disorder prediction 178 195 - -
Mch6g0468 352 MobiDBLite consensus disorder prediction 211 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0468 Mch-Chr6:3111139 Mch6g0836 Mch-Chr6:5792004 7.52E-46 dispersed
Mch6g0468 Mch-Chr6:3111139 Mch8g0237 Mch-Chr8:1564218 4.99E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0468 K19041 - csv:101203916 495.352