Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0470 GGAACGCTAGAAGATGGAAAATTGGTTGCAATTAAGAAACTTTCACTTAACAAATCCCAGCAAGGAGAACCTGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGCCTGCTTGGTTGTTGCTCAGATGGGCCTCAGCGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTGGATCTCATAATATATGGACAAAGCGACCAATTCCTCAACTGGAACACCAGATTGAAGATTATCAGAGGCATTGCTAAAGGGTTGCAGTATCTACACGAGGATTCCCACCTAAGAATTATTCACCGGGACATCAAAGCAAGCAACATTCTTCTCGATGACAAATTTCAACCGAAGATTGGTGATTTTGGGCTGGCCAGGTTTTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTGGGCTATACAGCACCAGAATATGCAATTAGGGGGGAACTGTCAGAGAAGGCAGATGTTTACAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGTAGAAAAAACACAAATCTTTCTTTACCATCCGAAATGCAGTATCTTCCTGAATATGTA 600 42.33 GTLEDGKLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGQSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPSEMQYLPEYV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3119654 3120449 - MC06g0392 Mch6g0470 689917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0470 200 SMART serkin_6 3 196 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0470 200 Gene3D Phosphorylase Kinase; domain 1 1 61 - -
Mch6g0470 200 ProSiteProfiles Protein kinase domain profile. 1 200 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0470 200 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0470 200 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 199 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Mch6g0470 200 SUPERFAMILY Protein kinase-like (PK-like) 4 184 IPR011009 -
Mch6g0470 200 Gene3D Transferase(Phosphotransferase) domain 1 62 200 - -
Mch6g0470 200 FunFam Lectin-domain containing receptor kinase A4.3 61 200 - -
Mch6g0470 200 Pfam Protein kinase domain 4 183 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0470 Mch-Chr6:3119654 Mch8g1491 Mch-Chr8:11300880 1.24E-70 dispersed
Mch6g0470 Mch-Chr6:3119654 Mch4g0037 Mch-Chr4:268672 8.31E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77465 PF07714 PK_Tyr_Ser-Thr 1.70E-42 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0470 - - - 0.0