Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g0480 | ATGGCGGTTGATCTCGCGGCTTTTCCGGCGAAGATGGACGATCAGATGGCGATTCAAGAAGCCACCACCGCCGGATTACAGAGCATGGAGCAACTGATCCGCGTCTTGAACACACAACCATCCCACAGCCCTCGCCTGGATCATCACCGTCGTCTCGATTGCTCCGAAATCACCGACTTCACCGTCTCCAAGTTCAAGCGAGTCATCTCTCTACTCAATCGAACCGGTCACGCTAGGTTTCGCCGTGGACCTGGATCCTCTGAATCTGATTCCGCCCTATGCAATCGTACTCCGATCCTCAATTCTCTCAATCCGCCGCTCAATTCCCCCAATCCACCCTCCAAAATCGACTTTCCTAAACCTAATTTCACTTCCGCCGCTAAATCCCCCGATTCTAGGGCTCCGATTGCGTTCTTGAACGAGACGACCGACACCGTCTCCTCCACGACGTCGTCTTTCATGTCCACGATTACCGGAGACGGCAGTGTATCCAACGGCAAACTCGATCTCTCACTCTTCACTACTCCGCCACCGCCGCCGCCGATCTCCACCGGTAAACCGCCTCTGTCGTCGAAGAGAAAGTGCGACGATAGCTCTAGATTCGCCTGCAAAATCCCCTCCAATTCCAAGCCCTGCCACTGCGCCAAGCGGAGAAAGTCCGGAGTCAAGAAGACCGTCCGAGTTCCGGCGATCAGCTCAAAAATCGCCGATATACCTTCCGATGAATACTCGTGGAGAAAGTACGGCCAAAAGCCGATCAAAGGCTCCCCGTATCCAAGAGGGTATTATAGATGCAGCACCGTCAAAGGCTGTCCAGCGAGGAAACACGTGGAGCGATCACGTGATGATCCGGCGATGCTCCTCGTAACTTATGACGGGGATCACCGTCACCCGCAGGCTACGGTGCCCGGGGCGGTGTCCCAGAAGAGTTAA | 933 | 55.09 | MAVDLAAFPAKMDDQMAIQEATTAGLQSMEQLIRVLNTQPSHSPRLDHHRRLDCSEITDFTVSKFKRVISLLNRTGHARFRRGPGSSESDSALCNRTPILNSLNPPLNSPNPPSKIDFPKPNFTSAAKSPDSRAPIAFLNETTDTVSSTTSSFMSTITGDGSVSNGKLDLSLFTTPPPPPPISTGKPPLSSKRKCDDSSRFACKIPSNSKPCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKHVERSRDDPAMLLVTYDGDHRHPQATVPGAVSQKS | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3169097 | 3170780 | - | MC06g_new0083 | Mch6g0480 | 689927 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g0480 | 310 | ProSiteProfiles | WRKY domain profile. | 234 | 300 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch6g0480 | 310 | SMART | WRKY_cls | 239 | 299 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch6g0480 | 310 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 17 | 301 | IPR044810 | GO:0003700(InterPro) | |
Mch6g0480 | 310 | Pfam | WRKY DNA -binding domain | 241 | 298 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch6g0480 | 310 | FunFam | WRKY transcription factor 65 | 223 | 300 | - | - | |
Mch6g0480 | 310 | Gene3D | WRKY domain | 226 | 300 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch6g0480 | 310 | Pfam | Plant zinc cluster domain | 192 | 237 | IPR018872 | - | |
Mch6g0480 | 310 | SUPERFAMILY | WRKY DNA-binding domain | 237 | 299 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0630 | Mch-Chr11:4053570 | Mch6g0480 | Mch-Chr6:3169097 | 2.13E-92 | dispersed | |
Mch1g1230 | Mch-Chr1:14640885 | Mch6g0480 | Mch-Chr6:3169097 | 2.47E-61 | dispersed | |
Mch5g0423 | Mch-Chr5:2897503 | Mch6g0480 | Mch-Chr6:3169097 | 2.49E-30 | dispersed | |
Mch6g0480 | Mch-Chr6:3169097 | Mch9g0924 | Mch-Chr9:7413522 | 2.30E-46 | dispersed | |
Mch6g0480 | Mch-Chr6:3169097 | Mch11g0325 | Mch-Chr11:2005560 | 1.50E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43522 | PF03106 | WRKY | 6.50E-26 | CL0274 | Mch | TF |
Pathway information
