Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0480 ATGGCGGTTGATCTCGCGGCTTTTCCGGCGAAGATGGACGATCAGATGGCGATTCAAGAAGCCACCACCGCCGGATTACAGAGCATGGAGCAACTGATCCGCGTCTTGAACACACAACCATCCCACAGCCCTCGCCTGGATCATCACCGTCGTCTCGATTGCTCCGAAATCACCGACTTCACCGTCTCCAAGTTCAAGCGAGTCATCTCTCTACTCAATCGAACCGGTCACGCTAGGTTTCGCCGTGGACCTGGATCCTCTGAATCTGATTCCGCCCTATGCAATCGTACTCCGATCCTCAATTCTCTCAATCCGCCGCTCAATTCCCCCAATCCACCCTCCAAAATCGACTTTCCTAAACCTAATTTCACTTCCGCCGCTAAATCCCCCGATTCTAGGGCTCCGATTGCGTTCTTGAACGAGACGACCGACACCGTCTCCTCCACGACGTCGTCTTTCATGTCCACGATTACCGGAGACGGCAGTGTATCCAACGGCAAACTCGATCTCTCACTCTTCACTACTCCGCCACCGCCGCCGCCGATCTCCACCGGTAAACCGCCTCTGTCGTCGAAGAGAAAGTGCGACGATAGCTCTAGATTCGCCTGCAAAATCCCCTCCAATTCCAAGCCCTGCCACTGCGCCAAGCGGAGAAAGTCCGGAGTCAAGAAGACCGTCCGAGTTCCGGCGATCAGCTCAAAAATCGCCGATATACCTTCCGATGAATACTCGTGGAGAAAGTACGGCCAAAAGCCGATCAAAGGCTCCCCGTATCCAAGAGGGTATTATAGATGCAGCACCGTCAAAGGCTGTCCAGCGAGGAAACACGTGGAGCGATCACGTGATGATCCGGCGATGCTCCTCGTAACTTATGACGGGGATCACCGTCACCCGCAGGCTACGGTGCCCGGGGCGGTGTCCCAGAAGAGTTAA 933 55.09 MAVDLAAFPAKMDDQMAIQEATTAGLQSMEQLIRVLNTQPSHSPRLDHHRRLDCSEITDFTVSKFKRVISLLNRTGHARFRRGPGSSESDSALCNRTPILNSLNPPLNSPNPPSKIDFPKPNFTSAAKSPDSRAPIAFLNETTDTVSSTTSSFMSTITGDGSVSNGKLDLSLFTTPPPPPPISTGKPPLSSKRKCDDSSRFACKIPSNSKPCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKHVERSRDDPAMLLVTYDGDHRHPQATVPGAVSQKS 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3169097 3170780 - MC06g_new0083 Mch6g0480 689927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0480 310 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0480 310 SMART WRKY_cls 239 299 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0480 310 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 301 IPR044810 GO:0003700(InterPro)
Mch6g0480 310 Pfam WRKY DNA -binding domain 241 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0480 310 FunFam WRKY transcription factor 65 223 300 - -
Mch6g0480 310 Gene3D WRKY domain 226 300 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch6g0480 310 Pfam Plant zinc cluster domain 192 237 IPR018872 -
Mch6g0480 310 SUPERFAMILY WRKY DNA-binding domain 237 299 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0630 Mch-Chr11:4053570 Mch6g0480 Mch-Chr6:3169097 2.13E-92 dispersed
Mch1g1230 Mch-Chr1:14640885 Mch6g0480 Mch-Chr6:3169097 2.47E-61 dispersed
Mch5g0423 Mch-Chr5:2897503 Mch6g0480 Mch-Chr6:3169097 2.49E-30 dispersed
Mch6g0480 Mch-Chr6:3169097 Mch9g0924 Mch-Chr9:7413522 2.30E-46 dispersed
Mch6g0480 Mch-Chr6:3169097 Mch11g0325 Mch-Chr11:2005560 1.50E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43522 PF03106 WRKY 6.50E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0480 - - - 0.0