Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g0493 | GACAGTTGGGGATTGGATGAGGCGATTTCCGGTTACTATGATTCGAGTTCGCCGGAGGGAGTTCTGTCGTCGTCGGCGGCGTCGAAGAACATACTATCGGAGAGGAACAGGAGGAGGAAGCTCAACGAGAGGCTTTTCGCGCTTCGATCGGTCGTCCCCAATATTACTAAGATGGACAAGGCTTCGATCATAAAGGATGCGATTAATTACATCCAGGATTTGCACGAACAAGAGAGGAGGATTCAGGCTGAAATTTACGAGATCGAATCGGGAAAATTTAAGAACATAACCGGGTACGGTTTCGACCAGGAGCTCCCATTGTTGCTCAGATCAAAGAGGAAGAAAACAGAGCAGTTCAGCTATGATTCTGCTGCTTCAAGAACTTCCCCCATTGAAGTGCTAGATCTGAGTGTGACATATATGGGGGAGAGAACAATGGTGGTGAGTTTGACATGCTGCAAAAGAGCAGATTCAATGGTTAAACTGTGTGAAGTTTTTGAATCACTGAAGCTCAAGATTATTACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGACTACTTGAAGATTAAAATAGAATCAGCCATTGCACGTCTTAGTCTTAGTGATCCACAGAGCCCTATGAGCATCTGA | 672 | 45.39 | DSWGLDEAISGYYDSSSPEGVLSSSAASKNILSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAINYIQDLHEQERRIQAEIYEIESGKFKNITGYGFDQELPLLLRSKRKKTEQFSYDSAASRTSPIEVLDLSVTYMGERTMVVSLTCCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIESAIARLSLSDPQSPMSI | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3265113 | 3268838 | + | MC06g0406 | Mch6g0493 | 689940 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g0493 | 223 | Pfam | Helix-loop-helix DNA-binding domain | 31 | 75 | IPR011598 | GO:0046983(InterPro) | |
Mch6g0493 | 223 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 26 | 88 | IPR036638 | GO:0046983(InterPro) | |
Mch6g0493 | 223 | Coils | Coil | 191 | 211 | - | - | |
Mch6g0493 | 223 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 25 | 199 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Mch6g0493 | 223 | Gene3D | - | 23 | 90 | IPR036638 | GO:0046983(InterPro) | |
Mch6g0493 | 223 | SMART | finulus | 31 | 80 | IPR011598 | GO:0046983(InterPro) | |
Mch6g0493 | 223 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 22 | 91 | - | - | |
Mch6g0493 | 223 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 25 | 74 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g0493 | Mch-Chr6:3265113 | Mch8g1350 | Mch-Chr8:9987288 | 7.39E-14 | dispersed | |
Mch2g0308 | Mch-Chr2:2321646 | Mch6g0493 | Mch-Chr6:3265113 | 2.10E-16 | transposed | |
Mch9g2245 | Mch-Chr9:22852426 | Mch6g0493 | Mch-Chr6:3265113 | 5.81E-21 | transposed | |
Mch6g0493 | Mch-Chr6:3265113 | Mch8g2611 | Mch-Chr8:29319891 | 5.63E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43523 | PF00010 | HLH | 1.50E-11 | No_clan | Mch | TF |
Pathway information
