Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0493 GACAGTTGGGGATTGGATGAGGCGATTTCCGGTTACTATGATTCGAGTTCGCCGGAGGGAGTTCTGTCGTCGTCGGCGGCGTCGAAGAACATACTATCGGAGAGGAACAGGAGGAGGAAGCTCAACGAGAGGCTTTTCGCGCTTCGATCGGTCGTCCCCAATATTACTAAGATGGACAAGGCTTCGATCATAAAGGATGCGATTAATTACATCCAGGATTTGCACGAACAAGAGAGGAGGATTCAGGCTGAAATTTACGAGATCGAATCGGGAAAATTTAAGAACATAACCGGGTACGGTTTCGACCAGGAGCTCCCATTGTTGCTCAGATCAAAGAGGAAGAAAACAGAGCAGTTCAGCTATGATTCTGCTGCTTCAAGAACTTCCCCCATTGAAGTGCTAGATCTGAGTGTGACATATATGGGGGAGAGAACAATGGTGGTGAGTTTGACATGCTGCAAAAGAGCAGATTCAATGGTTAAACTGTGTGAAGTTTTTGAATCACTGAAGCTCAAGATTATTACTGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGACTACTTGAAGATTAAAATAGAATCAGCCATTGCACGTCTTAGTCTTAGTGATCCACAGAGCCCTATGAGCATCTGA 672 45.39 DSWGLDEAISGYYDSSSPEGVLSSSAASKNILSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAINYIQDLHEQERRIQAEIYEIESGKFKNITGYGFDQELPLLLRSKRKKTEQFSYDSAASRTSPIEVLDLSVTYMGERTMVVSLTCCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIESAIARLSLSDPQSPMSI 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3265113 3268838 + MC06g0406 Mch6g0493 689940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0493 223 Pfam Helix-loop-helix DNA-binding domain 31 75 IPR011598 GO:0046983(InterPro)
Mch6g0493 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 88 IPR036638 GO:0046983(InterPro)
Mch6g0493 223 Coils Coil 191 211 - -
Mch6g0493 223 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 199 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch6g0493 223 Gene3D - 23 90 IPR036638 GO:0046983(InterPro)
Mch6g0493 223 SMART finulus 31 80 IPR011598 GO:0046983(InterPro)
Mch6g0493 223 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 22 91 - -
Mch6g0493 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 74 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0493 Mch-Chr6:3265113 Mch8g1350 Mch-Chr8:9987288 7.39E-14 dispersed
Mch2g0308 Mch-Chr2:2321646 Mch6g0493 Mch-Chr6:3265113 2.10E-16 transposed
Mch9g2245 Mch-Chr9:22852426 Mch6g0493 Mch-Chr6:3265113 5.81E-21 transposed
Mch6g0493 Mch-Chr6:3265113 Mch8g2611 Mch-Chr8:29319891 5.63E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43523 PF00010 HLH 1.50E-11 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0493 - - - 0.0