Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0499 ATGAGAGGTGCTGGAAGGAAATTGATCCATAAGGAATCCGGCAAATGTTCACACTCTAAGTTGGAAGCTGGATCAGAGCTAATCTTATCTCCAAAGTTGAAAAGGTGTAGTAAAATATACCATTCCAAACAGAAAAAACCAAGAACTAAATCACATGCACAGCCGACTGGTTCAACATACAAAAGGAGACCTCTTCCTAAAGCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGACAGTTGGCTGGTAAAAAATTTCTCTTAAAGAAACTTGATACAAAGTCTTCCAAGGATTTATTTTTGTCAAGGCTTCAAGGTGGAAAATCCCTGTCATCAACTAATTTGAAAGGGAATGCAGAAAAGGTTGAGCAAGTGGCTAAGAAAAACCAACAAAGGAAAAGGAGGAAGAACAAAAGAAAGAGGGAAAAATTGGAGTTAGATGAAGCTTCTCGCTTACAGAGGAGATCAAGATACCTTATGATTAAGATGAAGCTTGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAGGGCCACAGTCGAGAAAAAATTAAGCCCGAGAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTGCAAACTTGGAATCCGTGATGCTCTTCGCCAGCTGCATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCCGTTATTGGTCCTGATGGATCTGTCTACCATGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGATAATGATATTATACTTTGCGATGGGACATGCAACTGTGCTTTCCACCAAAAATGTCTGGACCCACCATTAGATACGGAAAATATTCCTCCGGGAGATCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCCCATCTTGGTACTCGGTTCTCATTGAACATTCGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCGGATGGTGGAAATGCATTACTAAATCACGAGGAAGATTGGCCTTCAGATGATTCTGAAGATGATGACTATAATCCAGATAAGAAGGAAAATGGCAACGAAAAATTAAGTGGGGAAGAGAATGATACGCATTTGCTGGAGGAGTCAAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAACTGATAGAGATGGCATTGCTTGCGAAGATCACTTCGGTGTTGGTACCAGCATAGTTTCTGATGGATCCATTGAAGAGGGTATTGTATGTGGTCGCCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATTCTGAAATGTTTGGAAAGGATGCTCCAGCTCAAGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAAACGGAGAGAAAAGGAATGTGATGCTGCAAGCACTCTTATGTCTCTTTGTGAAAGCGAAAAAAAGAGTCAAGATATTGACATGGAAGCAGACAAGAAACTTCCCAACTCAAAAAGTAGATCATTTTTTAGAATTCCTCGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCATCTAGAGACGTCAAGGAGAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTGAACAAATGGTTCAAGAATGCGCGATATTCTGCACTAAGAACTAGAAAGGCAGAGGGAGCAACACAATCCCATAGTTTTAGTAAGACTTCCACGGAATTCAGATTAGCAGATTCAAAGGAAAACGCTGGTAATCATCTTACAACAGAGGACACATCAATAAAAGAACTGCAGTTGAAATCTCGCAATGGCCTTTACAAGAAAAAGCAGCACAGAAGATCATCGCTTGTATCTTTCAACAGTAACAAGGATGCTTTGGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAGGAAGAAGGTTAATTTTGTAGGTAGAAGCAAAGGTGGAGGTCAAGAAGCAGAGGTGGAGCTGGAGAGACTATGTAAAATTAAGGATAGATTAGAGATAATGAAGCAGAAAATACTTAGACTATCAAATAAGAAAGATGATGGGACTTTAGATAGGTTACACATGTTTGAACAGTCTATAATATATGTTCCTGTGGCAGTGTTAAAGGAAAAGGTTTGA 2151 39.75 MRGAGRKLIHKESGKCSHSKLEAGSELILSPKLKRCSKIYHSKQKKPRTKSHAQPTGSTYKRRPLPKALSKGNKNVTIRQLAGKKFLLKKLDTKSSKDLFLSRLQGGKSLSSTNLKGNAEKVEQVAKKNQQRKRRKNKRKREKLELDEASRLQRRSRYLMIKMKLEQNLIDAYSGEGWKGHSREKIKPEKELQRAMKQILKCKLGIRDALRQLHLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNIRWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYNPDKKENGNEKLSGEENDTHLLEESSSSTSLSWSLDGEDLTDRDGIACEDHFGVGTSIVSDGSIEEGIVCGRRQRQAVDYKKLYSEMFGKDAPAQEQVSEDEDWGPAKRKRREKECDAASTLMSLCESEKKSQDIDMEADKKLPNSKSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVNKWFKNARYSALRTRKAEGATQSHSFSKTSTEFRLADSKENAGNHLTTEDTSIKELQLKSRNGLYKKKQHRRSSLVSFNSNKDALDFGDDISLKNLLKNRKTKVRKKVNFVGRSKGGGQEAEVELERLCKIKDRLEIMKQKILRLSNKKDDGTLDRLHMFEQSIIYVPVAVLKEKV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3307172 3316951 - MC06g0411 Mch6g0499 689946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0499 716 MobiDBLite consensus disorder prediction 40 74 - -
Mch6g0499 716 Pfam Homeodomain 505 549 IPR001356 GO:0003677(InterPro)
Mch6g0499 716 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Mch6g0499 716 MobiDBLite consensus disorder prediction 110 147 - -
Mch6g0499 716 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 31 712 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Mch6g0499 716 Gene3D - 495 568 - -
Mch6g0499 716 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
Mch6g0499 716 MobiDBLite consensus disorder prediction 1 19 - -
Mch6g0499 716 SUPERFAMILY Homeodomain-like 493 558 IPR009057 -
Mch6g0499 716 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Mch6g0499 716 MobiDBLite consensus disorder prediction 350 371 - -
Mch6g0499 716 FunFam pathogenesis-related homeodomain protein 496 560 - -
Mch6g0499 716 Pfam PHD-finger 240 291 IPR019787 -
Mch6g0499 716 ProSiteProfiles 'Homeobox' domain profile. 494 554 IPR001356 GO:0003677(InterPro)
Mch6g0499 716 MobiDBLite consensus disorder prediction 1 21 - -
Mch6g0499 716 SMART HOX_1 496 558 IPR001356 GO:0003677(InterPro)
Mch6g0499 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Mch6g0499 716 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Mch6g0499 716 MobiDBLite consensus disorder prediction 440 461 - -
Mch6g0499 716 CDD PHD_PRHA_like 239 291 IPR045876 -
Mch6g0499 716 SMART PHD_3 239 292 IPR001965 -
Mch6g0499 716 Coils Coil 119 147 - -
Mch6g0499 716 CDD homeodomain 502 555 IPR001356 GO:0003677(InterPro)
Mch6g0499 716 MobiDBLite consensus disorder prediction 444 461 - -
Mch6g0499 716 MobiDBLite consensus disorder prediction 330 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0464 Mch-Chr10:3034233 Mch6g0499 Mch-Chr6:3307172 1.18E-61 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43525 PF00628 PHD 9.60E-10 CL0390 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0499 - - - 0.0