Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch6g0513 | GAGAAAATACCCGTTGCGGAAGTGTTTGAACAATTGAAATGTGGCCCAGAAGGTCTGTCAACTCAGGAGGGAGAGAACAGACTCCAGATATTCGGTCCAAACAAATTAGAGGAGAAAAAGGAAAGCAAAATACTAAAGTTTTTGGGGTTCATGTGGAATCCCCTGTCATGGGTTATGGAATCTGCAGCTGTGATGGCAATTGCTTTGGCAAACGGTGGTGGGAAGCCACCGGATTGGGAAGACTTTGTGGGAATTATATGTTTGTTGGTTATCAACTCCACAATCAGTTTCATTGAGGAAAATAATGCTGGTAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCAAAAACTAAGGTGCTCAGAGATGGGAAATGGAGTGAGCAGGATGCTGCAATCTTGGTTCCAGGAGATATCATTAGTGTAAAGCTAGGAGATATCATCCCTGCTGATGCTCGACTTCTCGAGGGCGATCCTTTAAAAGTTGATCAATCTGCATTGACTGGAGAATCACTTCCTGTAACCAAAAATCCCGGGGATGAAATCTTCTCTGGTTCGACTTGCAAACAAGGTGAAATTGAAGCTGTTGTCATTGCCACAGGTGTCCATACCTTCTTCGGAAAAGCAGCACATCTTGTAGACAGCACCCACCAAGTAGGCCACTTCCAAAAGGTGCTCACAGCAATTGGGAACTTCTGCATTTGTTCCATCGCATTAGGAATGCTGGTTGAGATCATTGTCATGTACCCAATTCAACACCGCAAGTACCGCGATGGAATCGACAATCTTCTTGTTCTCTTGATCGGAGGAATACCAATCGCCATGCCGACTGTCCTGTCAGTGACAATGGCTATTGGCTCTCACAAGTTATCCCAACAAGGAGCCATCACTAAACGTATGACTGCCATTGAGGAAATGGCTGGTATGGATGTCCTCTGCAGTGACAAAACAGGAACATTGACTCTAAACAAGCTTAGTGTTGATGTAAATTTGGTTGAGGTTTTCGCTAGGGATGTGGATAAACAGCATGTGATATTGCTTGCTGCAAGGGCGTCTCGAACTGAAAATCAAGATGCAATTGATGCTGCTATTGTAGGAATGCTAGCTGATCCTAAGGAGGCACGAGCAGGCATAAGAGAAGTGCACTTCTTCCCATTCAATCCTGTGGATAAGAGAACCGCATTGACTTACATTGATTCTGATGGTAATTGGCATCGAGCAAGCAAAGGCGCTCCAGAGCAGATCTTAACGCTTTGCAACTGCAAGGAGGATGTCAAGAAGAAAGCTCATGCTGTTATAGACAAATTTGCCGAACGCGGACTTCGCTCATTAGCTGTTGGGAGACAGCAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTTGTTGGCTTATTGCCTCTATTTGATCCTCCAAGACACGACAGTGGAGAAACCATCAAAAGAGCTCTCAATCTAGGTGTCAATGTCAAGATGATTACTGGCGATCAGCTAGCCATTGCCAAAGAGACCGGTCGAAGACTTGGAATGGGGACTAACATGTACCCATCTGCATCATTACTTGGTCAGCACAAGGATGAAAGCATTGCAGGACTTCCTGTAGAAGAGTTGATTGAAAAGGCAGATGGATTTGCAGGAGTTTTTCCAGAGCACAAGTATGAAATTGTGAAGAAGTTGCAGGAGAGGAAACATATTTGTGGAATGACAGGAGATGGCGTGAACGATGCTCCTGCACTGAAGAAGGCCGACATTGGAATTGCAGTTGCCGATGCGACTGATGCTGCAAGAGGTGCTTCTGATATTGTCCTCACAGAGCCAGGCTTGAGTGTTATTATTAGTGCAGTCCTTACAAGTAGAGCTATCTTCCAGAGAATGAAGAATTACACAATTTATGCAGTTTCAATCACAATACGTATTGTGTTTGGTTTCTTGCTCATCGCCCTCATATGGAAGTTCGACTTCTCCCCGTTCATGGTTTTGATCATTGCCATTCTGAATGATGGTACAATCATGACCATCTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGCTGGAAATTGAAAGAGATATTTGCAACTGGCGTCATGCTTGGAAGTTACTTGGCATTGATGACTGTCATATTCTTCTGGCTAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATCAAGAACAGTCCAAAAGAAATGATGGCTGCCCTATACCTGCAAGTGAGCATTGTCAGCCAGGCTTTGATCTTCGTGACTCGATCTCGCAGCTGGTCCTACGTCGAACGGCCTGGCATGCTACTGATGGGTGCTTTCATGATTGCACAACTGGTTGCTACACTTATAGCAGTATATGCCAACTGGGGTTTTGCAAAGATAAAAGGAGTTGGCTGGGGATGGGCTGGTGTCATATGGATCTACAGCATTGTATTCTACATTCCATTGGACTTTATCAAATTCGCAATCCGCTATATCCTAAGTGGCAAGGCTTGGCTTAACTTGCTAGAAAACAAGACCGCCTTTACGACGAAGAAAAACTATGGAAAGGAGGAGAGGGAAGCTCAATGGGCTGCTAATCAAAGAACCTTACATGGCCTACAACCAGCCCCAGAAAAAACCAGTATCTTCCCTGAAAAGAGTAGCTACAGAGAGCTTTCGGAAATTGCCGAGCAGGCAAAGAGACGGGCGGAGATCGCTAGGCTTAGGGAACTCAATACTCTGAAGGGTCATGTTGAGTCAGTGGTGAAACTGAAAGGGCTGGATATTGATACAATTCAACAGCATTATACAGTCTAA | 2811 | 44.75 | EKIPVAEVFEQLKCGPEGLSTQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMESAAVMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTHQVGHFQKVLTAIGNFCICSIALGMLVEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDVNLVEVFARDVDKQHVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFFPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVKKKAHAVIDKFAERGLRSLAVGRQQVPEKRKESPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVMLGSYLALMTVIFFWLMKETEFFPEKFGVRSIKNSPKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGMLLMGAFMIAQLVATLIAVYANWGFAKIKGVGWGWAGVIWIYSIVFYIPLDFIKFAIRYILSGKAWLNLLENKTAFTTKKNYGKEEREAQWAANQRTLHGLQPAPEKTSIFPEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV | 936 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3459876 | 3465251 | - | MC06g0421 | Mch6g0513 | 689960 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch6g0513 | 936 | SUPERFAMILY | Calcium ATPase, transduction domain A | 116 | 213 | IPR008250 | - | |
| Mch6g0513 | 936 | PRINTS | P-type cation-transporting ATPase superfamily signature | 163 | 177 | - | - | |
| Mch6g0513 | 936 | PRINTS | P-type cation-transporting ATPase superfamily signature | 313 | 327 | - | - | |
| Mch6g0513 | 936 | PRINTS | P-type cation-transporting ATPase superfamily signature | 489 | 499 | - | - | |
| Mch6g0513 | 936 | PRINTS | P-type cation-transporting ATPase superfamily signature | 595 | 607 | - | - | |
| Mch6g0513 | 936 | PRINTS | P-type cation-transporting ATPase superfamily signature | 572 | 591 | - | - | |
| Mch6g0513 | 936 | PRINTS | P-type cation-transporting ATPase superfamily signature | 467 | 478 | - | - | |
| Mch6g0513 | 936 | SMART | Cation_ATPase_N_a_2 | 1 | 71 | IPR004014 | - | |
| Mch6g0513 | 936 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 315 | 321 | IPR018303 | - | |
| Mch6g0513 | 936 | SFLD | p-type atpase | 295 | 623 | IPR044492 | - | |
| Mch6g0513 | 936 | Pfam | E1-E2 ATPase | 115 | 292 | - | - | |
| Mch6g0513 | 936 | Gene3D | - | 325 | 472 | IPR023299 | GO:0000166(InterPro) | |
| Mch6g0513 | 936 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 859 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Mch6g0513 | 936 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 2 | 831 | IPR023298 | - | |
| Mch6g0513 | 936 | Gene3D | - | 78 | 799 | - | - | |
| Mch6g0513 | 936 | Pfam | haloacid dehalogenase-like hydrolase | 309 | 586 | - | - | |
| Mch6g0513 | 936 | CDD | P-type_ATPase_H | 18 | 825 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Mch6g0513 | 936 | Gene3D | - | 116 | 200 | - | - | |
| Mch6g0513 | 936 | NCBIfam | HAD-IC family P-type ATPase | 547 | 660 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0513 | 936 | NCBIfam | HAD-IC family P-type ATPase | 85 | 520 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0513 | 936 | FunFam | Plasma membrane ATPase | 465 | 620 | - | - | |
| Mch6g0513 | 936 | Coils | Coil | 887 | 907 | - | - | |
| Mch6g0513 | 936 | PRINTS | H+-transporting ATPase (proton pump) signature | 603 | 628 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0513 | 936 | PRINTS | H+-transporting ATPase (proton pump) signature | 544 | 560 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0513 | 936 | PRINTS | H+-transporting ATPase (proton pump) signature | 744 | 765 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0513 | 936 | PRINTS | H+-transporting ATPase (proton pump) signature | 572 | 588 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0513 | 936 | PRINTS | H+-transporting ATPase (proton pump) signature | 429 | 447 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch6g0513 | 936 | FunFam | Plasma membrane ATPase | 116 | 200 | - | - | |
| Mch6g0513 | 936 | SFLD | Haloacid Dehalogenase | 295 | 623 | - | - | |
| Mch6g0513 | 936 | SUPERFAMILY | HAD-like | 309 | 619 | IPR036412 | - | |
| Mch6g0513 | 936 | Gene3D | - | 885 | 936 | - | - | |
| Mch6g0513 | 936 | Gene3D | - | 310 | 609 | IPR023214 | - | |
| Mch6g0513 | 936 | FunFam | Plasma membrane ATPase | 325 | 472 | - | - | |
| Mch6g0513 | 936 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 18 | 790 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Mch6g0513 | 936 | FunFam | ATPase 4 plasma membrane-type | 558 | 799 | - | - | |
| Mch6g0513 | 936 | Pfam | Cation transporter/ATPase, N-terminus | 2 | 65 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch6g0513 | Mch-Chr6:3459876 | Mch8g0384 | Mch-Chr8:2734768 | 0 | dispersed | |
| Mch6g0507 | Mch-Chr6:3382907 | Mch6g0513 | Mch-Chr6:3459876 | 7.83E-15 | proximal | |
| Mch6g0513 | Mch-Chr6:3459876 | Mch8g2640 | Mch-Chr8:29630087 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch6g0513 | K01535 | - | csv:101221783 | 1740.7 |