Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0520 ATGAACAACAACAGCACCAACAACGACAACTCTTGTTCTCAAAATTGGCTTCCCTTCTCCTCTCTCTCTCACAACAGTAATCTCTCTCTCTTCCACCACCATCCCACTGACCTCGAAATCTTCACCGCCGCCCCCAAGCTCGAGGACTTCCTCCGCCCCTCGCCGCCCTTTCACTTCTCCGCCGCCGCCGCCTTTTCCCAACCGTGCGATTCTGACCTCAAAACCATCGCCGCCAGTTTCCTCCGCGGGGACCCTCCCCAACAACAACATGTACTGCACCATCCCCACGCGCCGCCCCCGCCTCTGCCCGACGCGCCCCCGCCTCCGCCCAAGAAGGCCGTTGATTCCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACAAGGCATCGATGGACTGGTCGATACGAAGCTCATTTGTGGGATAATAGTTGCAGAAGAGAGGGTCAGAGTAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGATTACGAGAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAAAAGCAGTGGTTTTTCTAGAGGAGCTTCCATTTACAGAGGTGTAACAAGGCACCACCAACATGGTAGATGGCAAGCAAGAATTGGTAGAGTCGCTGGCAACAAAGATCTCTATCTTGGAACATTCAGCACTCAGGAAGAAGCAGCAGAGGCCTACGATATTGCAGCCATCAAATTCCGAGGCCTCAATGCGGTGACCAACTTCGACATCAGCCGCTACGACGTCAAGAGCATCGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGGGCAGCAAATCCAAGACAGCCTCCGACTCAGCTGCCTCCGACAGCGGTGGAAGCCGATCAACCGAAGAACGAGACCACCATTCCCCGGCGTCCTCCACTGCCACATTAAGCTTCGCAGTCCCCATCAAGCAAGACCCATCCGATCAATACTGGTCGGTCCTCGGCTACAGCATGGGCAGCTTCAGCACCGTCGTCTCCAAACCCGACAGCATTCCAGTGCCATCATCGTCGCCGTTTCAGCAATCTCCAAACCCCGGACCACACATGATGCTCCCCGCCATCACCAACATATCTTCGAACGAGAATGAGGGCGGGGTTTACGGCGGGGTTTATGTCCAGCAGCCACAGCCACAGCCGCAGCCGCAGCAGCAACAATACGCGACACCAATTGCATTAAGCAGCGGAATAAGCTTTGAAATTGGGCAATCAATGAGGGGTTTGGAAGCTCATTCAAAAGCAAGTCTTTTTCAGACGCCAATATTTGGAATGGAATGA 1395 54.05 MNNNSTNNDNSCSQNWLPFSSLSHNSNLSLFHHHPTDLEIFTAAPKLEDFLRPSPPFHFSAAAAFSQPCDSDLKTIAASFLRGDPPQQQHVLHHPHAPPPPLPDAPPPPPKKAVDSFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGSKSKTASDSAASDSGGSRSTEERDHHSPASSTATLSFAVPIKQDPSDQYWSVLGYSMGSFSTVVSKPDSIPVPSSSPFQQSPNPGPHMMLPAITNISSNENEGGVYGGVYVQQPQPQPQPQQQQYATPIALSSGISFEIGQSMRGLEAHSKASLFQTPIFGME 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3525336 3528369 - MC06g0428 Mch6g0520 689967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0520 464 FunFam AP2-like ethylene-responsive transcription factor ANT 122 188 - -
Mch6g0520 464 FunFam AP2-like ethylene-responsive transcription factor 221 282 - -
Mch6g0520 464 CDD AP2 122 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 SUPERFAMILY DNA-binding domain 122 188 IPR016177 GO:0003677(InterPro)
Mch6g0520 464 Pfam AP2 domain 223 272 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 Pfam AP2 domain 124 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 ProSiteProfiles AP2/ERF domain profile. 123 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 SUPERFAMILY DNA-binding domain 221 282 IPR016177 GO:0003677(InterPro)
Mch6g0520 464 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 PRINTS Ethylene responsive element binding protein signature 262 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 341 - -
Mch6g0520 464 CDD AP2 221 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 Gene3D AP2/ERF domain 123 188 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 Gene3D AP2/ERF domain 222 282 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 MobiDBLite consensus disorder prediction 85 116 - -
Mch6g0520 464 MobiDBLite consensus disorder prediction 295 317 - -
Mch6g0520 464 MobiDBLite consensus disorder prediction 92 113 - -
Mch6g0520 464 MobiDBLite consensus disorder prediction 295 339 - -
Mch6g0520 464 ProSiteProfiles AP2/ERF domain profile. 222 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 SMART rav1_2 123 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch6g0520 464 SMART rav1_2 222 286 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0520 Mch-Chr6:3525336 Mch8g2499 Mch-Chr8:27903072 2.61E-117 dispersed
Mch6g0520 Mch-Chr6:3525336 Mch8g1031 Mch-Chr8:7280075 1.62E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43526 PF00847 AP2 8.50E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0520 K09285 - csv:101210453 523.472