Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0535 GATCCACCGCCGGAATTCATATTCCGGTCAAAACTCCCGGACATTACCATCCCCAACCACCTCCCCCTCCACACTTACTGCTTCGAAAAGCTCCCGGAATTCAGAGACCGTCCATGTCTAATCAACGCCGCCACCGGCGAGACCCACACCTACGGCGAAGTCCACAAGACGGCGCGTCGAGTCGCCGCCGGCCTCCACAGAATGGGCATCCGGAAAGGTGACGTCATCATGCTTCTACTCCAGAACAGCCCGCAGTTCGTGCTGGCCTTCCTTGGCGCCTCATTTCTCGGCGCCGTGGCCACGATGGCGAACCCGTTCTTCACGGCGACGGAGGTGGCCAAGCAAGCCGTCTCCGCCGGAGCCAAGCTGATCGTAACCCAAGCCGCGTTCGCCGCCAAGGTGAAGAATCTGACCTGTCACGAAAACGACGTCATCATCAAAGTCATATACATCGACCAGCCCCCACCGGACGACGACGGAGGGCGGCATTTCTCGGAGCTGATGCGGGCGGCGGAAGAGGAAATTCCGGAAGTGAAAATTAGTCCGGACGACGTCGTTGCGCTGCCTTATTCTTCTGGAACGACGGGTCTCCCGAAAGGAGTTATGTTGACCCACAGGGCATTGGTGACCAGCGTGGCGCAACAAGTGGACGGCGAGAACCCGCACCTGAACGTAAGCCGCGACGACGTGGTTCTGTGCGTGCTCCCGTTGTTTCACATATATTCGCTCAACTGCATCATGATGTGTTCATTGCGAGTGGGAGCCGCGATCTTGATTGTACACAAGTTCGATATTAACTCTCTCGTGAAATTTGTGCCAAAATATAAGGTCACGGTTGCGCCATTGGTGCCCCCTATTGTTCTGGCAATTGCGGAGTCTCCGGCTGTGGAGAGTTCCGACATGTCGTCCATACGGATGGTGTTGTCGGGAGCCGCACCTCTGGGGAAGGAGCTTGAAGATGCGGTCAAGGCTAAGCTTCCGCAAGCGATTCTTGGACAGGGATATGGAATGACGGAGGGGTTGGTGTTCACAATGTCATTGGCGTTTGCGAAGGAAAGGTTTGAGGTAAAATCGGGTGCGTGCGGGACGTTGATGAGAAATTCGGAGATGAAGATAATCAACCCTCAAACGGGGGCTTCTCTTCCAAGAAATCAACCTGGGGAGATTTGCATCCGAAGCACTCAGTTTATGAAAGGGTATCTCCACGACGAAGAGGCCACGAAGGGCATAATCGACAAAAACGGATGGCTCCACTCCGGCGACATAGGCTTCGTCGACGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGTTTCCAAGTGGCGCCGGCGGAGCTGGAAGCCCTGCTGATTTCCCACGGCCACATCGCCGACGCTGCGGTCGTACCCATGAAAGATGAAGTTTCCGGAGAGGTTCCGGCTGCTTTCATTGTCCGATCCGACAGTTCCAACATCGCCGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTTTATAAGAGGATCAATCGTGTTTTCTTCGTGGATTCCATCCCTAAAAGTTCATCTGGCAAAATCTTGCGGAGACAACTTAGAGCTTTGCTCGCAGCCAGTATTCCAAAT 1629 54.14 DPPPEFIFRSKLPDITIPNHLPLHTYCFEKLPEFRDRPCLINAATGETHTYGEVHKTARRVAAGLHRMGIRKGDVIMLLLQNSPQFVLAFLGASFLGAVATMANPFFTATEVAKQAVSAGAKLIVTQAAFAAKVKNLTCHENDVIIKVIYIDQPPPDDDGGRHFSELMRAAEEEIPEVKISPDDVVALPYSSGTTGLPKGVMLTHRALVTSVAQQVDGENPHLNVSRDDVVLCVLPLFHIYSLNCIMMCSLRVGAAILIVHKFDINSLVKFVPKYKVTVAPLVPPIVLAIAESPAVESSDMSSIRMVLSGAAPLGKELEDAVKAKLPQAILGQGYGMTEGLVFTMSLAFAKERFEVKSGACGTLMRNSEMKIINPQTGASLPRNQPGEICIRSTQFMKGYLHDEEATKGIIDKNGWLHSGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGHIADAAVVPMKDEVSGEVPAAFIVRSDSSNIAEDEIKQYISKQVVFYKRINRVFFVDSIPKSSSGKILRRQLRALLAASIPN 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3624512 3628414 + MC06g0441 Mch6g0535 689982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0535 543 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Mch6g0535 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 534 - GO:0016405(PANTHER)
Mch6g0535 543 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Mch6g0535 543 Gene3D - 438 540 IPR045851 -
Mch6g0535 543 Pfam AMP-binding enzyme 32 401 IPR000873 -
Mch6g0535 543 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Mch6g0535 543 SUPERFAMILY Acetyl-CoA synthetase-like 11 539 - -
Mch6g0535 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 9 438 - -
Mch6g0535 543 CDD 4CL 17 533 - -
Mch6g0535 543 Gene3D - 3 437 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0535 Mch-Chr6:3624512 Mch8g1049 Mch-Chr8:7367318 1.90E-252 dispersed
Mch6g0535 Mch-Chr6:3624512 Mch8g2685 Mch-Chr8:30119516 1.93E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0535 K01904 - csv:101218077 798.89