Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0557 ATGGGATCATCTTTCAGCTGCTGTGGTTCAGAAAGATCAGTAGATCGAGGGATCGCCGGGGTTAACAATAATTCATGGAGGATTTTTACGTACAAGGAGTTGCATACGGCTACGAACGGTTTCCATGAGGACAACAAACTCGGGGAAGGAGGATTTGGAAGTGTTTACTGGGGAAAAACAAGCGATGGGCTGCAGATAGCGGTGAAGAAGCTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCAGTGGAAGTGGAGGTGCTTGCGAGGCTAAGGCACAAGAACTTGTTGGGTTTGAGGGGTTACTGTGTGGGGACTGACCAGAGGCTTATAGTTTATGATTACATGCCAAATCTGAGCTTACTGTCTCATCTCCATGGCCAATTTGCTGCTGAAGCTCAATTGGATTGGAAAACAAGAATCAAGATCGCTCTTGGCTCTGCGCAAGGCATTATGTATTTGCACCAAGAGGTAACACCCCACATAATCCACAGAGATATCAAAGCAAGCAACATTTTGTTGGATTCAGATTTTGAGCCACTTGTAGCTGATTTTGGGTTTGCAAAACTAATACCAGAGGGCGTCAGTCACATGACAACTCGAGTGAAAGGAACCTTAGGATATCTTGCTCCCGAATACGCCATGTGGGGTAAGGTTTCAGAGAGTTGTGACGTTTTTAGTTATGGGATTCTTCTGCTAGAGCTCATGACAGGAAGAAAGCCAATAGAGAAACTTCCTGGCGGAGCAAAGAGAACCATTATTGATTGGGTTGACACAATGATAAACAAAGGCAGGTTCAAGGATTTAGCTGATCGTAAGCTAAAGGGACAGCTTAATTGGAAGCAGTTCGAGCACATAATCCATTTGGCAATCATGTGTGTGCATCAGGACCCAAATAAACGGCCTACCATAAAAGAGGTGGTGGAGAGTTTGAAAGGGTTGATGCTTGATAATGGAGAACACAAAGGAAACGTTAAGGCAATGCCTATGAGTGTCCAAAGTGTTAAATATATTGACCATGAAGAGGTGTTTGAAAATGATCGTGTGATCATGAGCAAAGAAGATCGTGGAGCTGGCCCAGAAGAAAGCTTTGATTATGGGGTTTTCAGTGCTATTGAAGAGCAGAAGATGAGAGATTGGAGAATGGTTCAGAAGATATAA 1164 43.64 MGSSFSCCGSERSVDRGIAGVNNNSWRIFTYKELHTATNGFHEDNKLGEGGFGSVYWGKTSDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGQFAAEAQLDWKTRIKIALGSAQGIMYLHQEVTPHIIHRDIKASNILLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIEKLPGGAKRTIIDWVDTMINKGRFKDLADRKLKGQLNWKQFEHIIHLAIMCVHQDPNKRPTIKEVVESLKGLMLDNGEHKGNVKAMPMSVQSVKYIDHEEVFENDRVIMSKEDRGAGPEESFDYGVFSAIEEQKMRDWRMVQKI 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3768982 3771165 - MC06g0459 Mch6g0557 690004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0557 387 PANTHER OS01G0750732 PROTEIN 17 334 IPR050885 -
Mch6g0557 387 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524(InterPro)
Mch6g0557 387 Gene3D Phosphorylase Kinase; domain 1 15 116 - -
Mch6g0557 387 Gene3D Transferase(Phosphotransferase) domain 1 117 326 - -
Mch6g0557 387 FunFam PTI1-like tyrosine-protein kinase At3g15890 15 116 - -
Mch6g0557 387 Pfam Protein kinase domain 41 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0557 387 CDD STKc_IRAK 47 315 - -
Mch6g0557 387 ProSiteProfiles Protein kinase domain profile. 41 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0557 387 SUPERFAMILY Protein kinase-like (PK-like) 20 312 IPR011009 -
Mch6g0557 387 FunFam PTI1-like tyrosine-protein kinase At3g15890 117 327 - -
Mch6g0557 387 SMART serkin_6 41 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0557 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0208 Mch-Chr10:1261576 Mch6g0557 Mch-Chr6:3768982 1.52E-138 dispersed
Mch6g0557 Mch-Chr6:3768982 Mch8g1108 Mch-Chr8:7826337 3.87E-139 dispersed
Mch6g0557 Mch-Chr6:3768982 Mch8g2657 Mch-Chr8:29905892 1.64E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77467 PF00069 Pkinase 1.10E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0557 - - - 0.0