Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0569 ATGGTTCGCTTCCATTTTGGTTGGCTTGCTCAAAATTTTCATTTCTTTTTCCTCTCCTCTCACCAAACAACTTTAATTCCTAGTAGAAACACTGATTACCTCACCCAACAGAACCCAGATCTTCTCTCTTCCTGCTGTCTCTCTGTATCTTCTTCTTTCTCTGTGCCTCTCCACCAACAACTGGGAAGAGGAGGATTCTACTCAACACCATGTTGCTGCTATTTTGATGGGTCATTGAGGATTTTTACGTTTCAGCTCATTCTCCTGTTTCCGGGCATGGAGTTGAGGAAGGAGAAGCTTGTTAGGTTTTATTCTGATCACAAAAAGCATAAGAAATCTGCTATTGGAAATAACAATGAAGCAATGAAACTTGAGAAGTCATCATCCAAATACTATATTTCGTCATCAAAATTCCTAATACCTGATAACGGATTAGGGGGAAGCAAAAATAAATTTGCTGAAACTTTTAAAACTGAGAAGTCCAAGGTGTTCCCTGAGGACCATGAACCATGGAGCAGAAGAATACTTGACCCTGGTAGCAATATTGTCTTGAAATGGAACCGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTCGACCCACTGTATCTTTTCTTGCCTGCTTTGAATGGGAATGGGCCATCATCATGTGTAAGGACAGACTGGAAATTGCGAATAGTTGTGACCTGTTTCCGGACTATTGCAGATATTTTCTATCTTCTGCACATGATTATAAAGTTCAGGACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTCGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATTAGGTCGGACTTTTTCGTTGATCTAATTGCCACCCTGCCTCTCCCTCAGATTGTCATCTGGTTCATCATACCAGCAACAAGAAGTCGTCTAACTGATCATAAGAACAATGCTCTAGCACTTATTGTTCTGCTTCAATATATTCCGAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATCAAAGCAAATGGAGTTGTTACAAAAACGGCTTGGGCAGGAGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCATGTTCTAGGTGCTGCATGGTACTTGCTGTCAGTTGACAGATATACGTCATGCTGGAAATCATTTTGTAGGAAGAAGGAATACAATCCACTAGAATGCAACCTAATTTTTTTTGATTGTGATACATTTAACCATAATGACCGCGATACATGGGCAAATAGTACACTTGTTTTTGACAAATGTGGCCCTGATGGAGTTTTCAAGTATGGCATTTTTGGGAATGCAATGTCAAAGAATGTTGTCTCTTCAAGCTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAGACAACCACTTTTATCGGTGAGACACTTTTTGCTGTGCTCATTGCCATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTCACGGTAAGGCTTGAGGAATGGAGACTAAAGCGAAGAGACACAGAAGAGTGGATGAGACACCGCCAACTCCCTGAAGACTTGAAACGACGTGTTCGACGTTTTGTACAATATAAGTGGGTAGCAACTCGAGGAGTTGATGAAGAAGCCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGTGATATTCAATGCCACCTATGTCTAGATCTTGTCCGACGAGTCCCTTTCTTTGCACAGATGGATGATCAGCTGCTTGATGCAATATGTGAACGCCTCGTGTCCTCCTTGAGCACTGAAGGTACTTATATTGTCCGTGAGGGCGACCCTGTAACAGAGATGCTGTTCATTATCCGAGGCAGATTGGAGAGTTCTACTACAAATGGAGGTCGCTCTGGTTTCTTCAACTCCATAACATTGCGTCCTGGAGACTTTTGTGGGGAAGAACTACTTTCTTGGGCCTTGCTCCCAAAATCCACCACCAACTTGCCTTCTTCAACTAGAACAGTCAAAGCACTCAATGAAGTCGAAGCTTTTGCACTCCGTGCTGAAGATCTTAAATTTGTGGCCAACCAGTTCAGACGGCTTCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCCCACCATTGGAGAACATGGGCAGCTTGCTTCATTCAGGCTGCTTGGCGTCGTCATAAGAAAAGGATGTTGGCAAAAGATCTCTTAATGAAGGAATCATTTACATTCTCTGATAATGTGGCTGAAGAAACTAGCCAAGGAGGAGGGGAACAATTCTCTATTGTTTCAAATCCTTCTCAGACAAAAATGTATCTGGATGTAACCTTACTGGCGTCAAGGTTTGCTGCAAACACAAGGAGGGGCGTTCAGAGAATGAAAGATGACTTGCCAAAGTTACAGAAGCCGGCCGAACCTGACTTTTCCATCGAGCCTGATAGATAA 2463 42.39 MVRFHFGWLAQNFHFFFLSSHQTTLIPSRNTDYLTQQNPDLLSSCCLSVSSSFSVPLHQQLGRGGFYSTPCCCYFDGSLRIFTFQLILLFPGMELRKEKLVRFYSDHKKHKKSAIGNNNEAMKLEKSSSKYYISSSKFLIPDNGLGGSKNKFAETFKTEKSKVFPEDHEPWSRRILDPGSNIVLKWNRVFICSCLLALFVDPLYLFLPALNGNGPSSCVRTDWKLRIVVTCFRTIADIFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLIATLPLPQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTSCWKSFCRKKEYNPLECNLIFFDCDTFNHNDRDTWANSTLVFDKCGPDGVFKYGIFGNAMSKNVVSSSFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEEAILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPKSTTNLPSSTRTVKALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMLAKDLLMKESFTFSDNVAEETSQGGGEQFSIVSNPSQTKMYLDVTLLASRFAANTRRGVQRMKDDLPKLQKPAEPDFSIEPDR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3847913 3856283 - MC06g0470 Mch6g0569 690016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0569 820 ProSiteProfiles cAMP/cGMP binding motif profile. 583 667 IPR000595 -
Mch6g0569 820 SUPERFAMILY Voltage-gated potassium channels 178 505 - -
Mch6g0569 820 SMART cnmp_10 583 714 IPR000595 -
Mch6g0569 820 Pfam Ion transport protein 191 510 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch6g0569 820 CDD CAP_ED 583 714 IPR000595 -
Mch6g0569 820 Gene3D - 214 508 - -
Mch6g0569 820 FunFam Cyclic nucleotide-gated ion channel 1 581 699 - -
Mch6g0569 820 PRINTS EAG/ELK/ERG potassium channel family signature 496 505 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch6g0569 820 PRINTS EAG/ELK/ERG potassium channel family signature 244 253 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch6g0569 820 PRINTS EAG/ELK/ERG potassium channel family signature 452 469 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch6g0569 820 PRINTS EAG/ELK/ERG potassium channel family signature 546 553 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch6g0569 820 PRINTS EAG/ELK/ERG potassium channel family signature 361 371 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch6g0569 820 PRINTS EAG/ELK/ERG potassium channel family signature 478 489 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch6g0569 820 SUPERFAMILY cAMP-binding domain-like 513 705 IPR018490 -
Mch6g0569 820 Gene3D Jelly Rolls 581 701 IPR014710 -
Mch6g0569 820 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 136 799 - -
Mch6g0569 820 Pfam Cyclic nucleotide-binding domain 606 695 IPR000595 -
Mch6g0569 820 Gene3D Helix hairpin bin 511 574 - -
Mch6g0569 820 MobiDBLite consensus disorder prediction 798 820 - -
Mch6g0569 820 FunFam Cyclic nucleotide-gated ion channel 1 510 574 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0634 Mch-Chr11:4089781 Mch6g0569 Mch-Chr6:3847913 0 dispersed
Mch1g0814 Mch-Chr1:11695435 Mch6g0569 Mch-Chr6:3847913 2.02E-200 dispersed
Mch2g0345 Mch-Chr2:2559871 Mch6g0569 Mch-Chr6:3847913 4.36E-264 dispersed
Mch4g2352 Mch-Chr4:24784532 Mch6g0569 Mch-Chr6:3847913 8.86E-122 dispersed
Mch6g0569 Mch-Chr6:3847913 Mch9g0659 Mch-Chr9:4957895 7.09E-285 dispersed
Mch6g0569 Mch-Chr6:3847913 Mch8g1531 Mch-Chr8:11952081 2.12E-302 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0569 K27629 - csv:101218643 1465.29