Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch6g0588 | ATGGTGGTTGTGTCTAAGCTCTTGTGTTGTTTAATCGTTCTCTCTTCTGCCGTCCTTTGCCTTTCCTACGAACCTCGGAACCCTGAAGTGGAAGCCCTGATTAATGTGAAGGCGGCATTGAATGATCCGCATGGGGTGCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGCAGCTGGGCAATGATCACCTGCTCCCCTGAGAACCTCGTTATAGGACTGGGAGCTCCGAGCCAGTCTCTTTCTGGAAGTTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAATAACATTTCCGGTCCAGTTCCCATTGAACTTGGAACTCTGCCATTGCTTCAAACATTAGATCTCTCAAATAATCGGTTCTCCGGCCCAATACCAGCATCTTTTGGTCAGCTGAATGGTTTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCGTGTCCTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAACCCAATGATTTGTGGAATTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCCATTCCTCTTTCTTTCTCTCTAGAATCATCCCCTGGAAAACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGAGTCAGCCTGAGCTGTGCTTTCCTAATTTTCCTAGCGCTTGGAATTCTTTGGCGCAGAAAAAATCAGAGGACCAAAACCATCCTAGACAGCAATGTAGAGAATCAAGAAGTGGGACTTGTGCGCTTAGGAAACCTCAGAAACTTCAGTTTCAAAGAGCTCCAGGTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGGTTTGGCAATGTGTACAAGGGAAAGCTAGGCGATGGGACTATGGTGGCAGTGAAACGGCTAAAGGATGTAACGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTACCCTTATATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCCTGGACTGGAATACGAGGAAGAGAATAGCAATTGGAGCTGCAAGGGGTCTGCTGTACCTCCACGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGACGACTTCTGTGAAGCTGTGGTCGGTGATTTCGGACTCGCAAAGCTGCTTGACCATGCCGATTCTCATGTGACCACTGCTGTTCGTGGCACTGTCGGGCACATTGCTCCAGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGAATCCTTTTGATCGAGCTAATTACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAAATTGAAGTAGGGGAGATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCCCACCGACCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCATACTCATAATGACTTGAATGTCAACCTCTTCCCTTCACGGAACAGTAGCAAAAGTACATACAACCCCACAAATGCAATGAAGAATTATGGCAATGATCGAGATCATTCGAGCATGTTAAGTTCAACAATGGACGACGACGACGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCTGGTCCAAGATAG | 1926 | 47.35 | MVVVSKLLCCLIVLSSAVLCLSYEPRNPEVEALINVKAALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPVPIELGTLPLLQTLDLSNNRFSGPIPASFGQLNGLRYLRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGISPSEGCSGSANAIPLSFSLESSPGKLRSKRIAVALGVSLSCAFLIFLALGILWRRKNQRTKTILDSNVENQEVGLVRLGNLRNFSFKELQVATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVNLFPSRNSSKSTYNPTNAMKNYGNDRDHSSMLSSTMDDDDDERSLDSYAMELSGPR | 641 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3988512 | 3994030 | - | MC06g0486 | Mch6g0588 | 690035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch6g0588 | 641 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 26 | 208 | - | - | |
Mch6g0588 | 641 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 373 | 585 | - | - | |
Mch6g0588 | 641 | MobiDBLite | consensus disorder prediction | 586 | 615 | - | - | |
Mch6g0588 | 641 | Gene3D | Transferase(Phosphotransferase) domain 1 | 373 | 584 | - | - | |
Mch6g0588 | 641 | MobiDBLite | consensus disorder prediction | 586 | 641 | - | - | |
Mch6g0588 | 641 | Pfam | Leucine rich repeat | 118 | 177 | IPR001611 | GO:0005515(InterPro) | |
Mch6g0588 | 641 | Gene3D | Phosphorylase Kinase; domain 1 | 265 | 372 | - | - | |
Mch6g0588 | 641 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 415 | 427 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0588 | 641 | Pfam | Leucine rich repeat N-terminal domain | 27 | 66 | IPR013210 | - | |
Mch6g0588 | 641 | SMART | serkin_6 | 296 | 565 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch6g0588 | 641 | FunFam | Somatic embryogenesis receptor kinase 1 | 265 | 372 | - | - | |
Mch6g0588 | 641 | Gene3D | Ribonuclease Inhibitor | 26 | 208 | IPR032675 | - | |
Mch6g0588 | 641 | Pfam | Protein tyrosine and serine/threonine kinase | 299 | 565 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch6g0588 | 641 | ProSiteProfiles | Protein kinase domain profile. | 296 | 571 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch6g0588 | 641 | SUPERFAMILY | L domain-like | 27 | 194 | - | - | |
Mch6g0588 | 641 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 7 | 641 | - | - | |
Mch6g0588 | 641 | ProSitePatterns | Protein kinases ATP-binding region signature. | 302 | 324 | IPR017441 | GO:0005524(InterPro) | |
Mch6g0588 | 641 | SUPERFAMILY | Protein kinase-like (PK-like) | 275 | 566 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g0588 | Mch-Chr6:3988512 | Mch8g0035 | Mch-Chr8:204411 | 1.60E-199 | dispersed | |
Mch6g0588 | Mch-Chr6:3988512 | Mch4g2400 | Mch-Chr4:25103365 | 5.05E-225 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77468 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-42 | CL0016 | Mch | PK |
Pathway information
