Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch6g0588 ATGGTGGTTGTGTCTAAGCTCTTGTGTTGTTTAATCGTTCTCTCTTCTGCCGTCCTTTGCCTTTCCTACGAACCTCGGAACCCTGAAGTGGAAGCCCTGATTAATGTGAAGGCGGCATTGAATGATCCGCATGGGGTGCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGCAGCTGGGCAATGATCACCTGCTCCCCTGAGAACCTCGTTATAGGACTGGGAGCTCCGAGCCAGTCTCTTTCTGGAAGTTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAATAACATTTCCGGTCCAGTTCCCATTGAACTTGGAACTCTGCCATTGCTTCAAACATTAGATCTCTCAAATAATCGGTTCTCCGGCCCAATACCAGCATCTTTTGGTCAGCTGAATGGTTTACGCTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTTCCCGTGTCCTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAACCCAATGATTTGTGGAATTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCCATTCCTCTTTCTTTCTCTCTAGAATCATCCCCTGGAAAACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGAGTCAGCCTGAGCTGTGCTTTCCTAATTTTCCTAGCGCTTGGAATTCTTTGGCGCAGAAAAAATCAGAGGACCAAAACCATCCTAGACAGCAATGTAGAGAATCAAGAAGTGGGACTTGTGCGCTTAGGAAACCTCAGAAACTTCAGTTTCAAAGAGCTCCAGGTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGGTTTGGCAATGTGTACAAGGGAAAGCTAGGCGATGGGACTATGGTGGCAGTGAAACGGCTAAAGGATGTAACGGGTACCACTGGAGAGTCCCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTACCCTTATATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCCTGGACTGGAATACGAGGAAGAGAATAGCAATTGGAGCTGCAAGGGGTCTGCTGTACCTCCACGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGACGACTTCTGTGAAGCTGTGGTCGGTGATTTCGGACTCGCAAAGCTGCTTGACCATGCCGATTCTCATGTGACCACTGCTGTTCGTGGCACTGTCGGGCACATTGCTCCAGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGAATCCTTTTGATCGAGCTAATTACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAAATTGAAGTAGGGGAGATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCCCACCGACCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCATACTCATAATGACTTGAATGTCAACCTCTTCCCTTCACGGAACAGTAGCAAAAGTACATACAACCCCACAAATGCAATGAAGAATTATGGCAATGATCGAGATCATTCGAGCATGTTAAGTTCAACAATGGACGACGACGACGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCTGGTCCAAGATAG 1926 47.35 MVVVSKLLCCLIVLSSAVLCLSYEPRNPEVEALINVKAALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPVPIELGTLPLLQTLDLSNNRFSGPIPASFGQLNGLRYLRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGISPSEGCSGSANAIPLSFSLESSPGKLRSKRIAVALGVSLSCAFLIFLALGILWRRKNQRTKTILDSNVENQEVGLVRLGNLRNFSFKELQVATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVNLFPSRNSSKSTYNPTNAMKNYGNDRDHSSMLSSTMDDDDDERSLDSYAMELSGPR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3988512 3994030 - MC06g0486 Mch6g0588 690035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch6g0588 641 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 208 - -
Mch6g0588 641 FunFam Somatic embryogenesis receptor-like kinase 1 373 585 - -
Mch6g0588 641 MobiDBLite consensus disorder prediction 586 615 - -
Mch6g0588 641 Gene3D Transferase(Phosphotransferase) domain 1 373 584 - -
Mch6g0588 641 MobiDBLite consensus disorder prediction 586 641 - -
Mch6g0588 641 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515(InterPro)
Mch6g0588 641 Gene3D Phosphorylase Kinase; domain 1 265 372 - -
Mch6g0588 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0588 641 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Mch6g0588 641 SMART serkin_6 296 565 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0588 641 FunFam Somatic embryogenesis receptor kinase 1 265 372 - -
Mch6g0588 641 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
Mch6g0588 641 Pfam Protein tyrosine and serine/threonine kinase 299 565 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch6g0588 641 ProSiteProfiles Protein kinase domain profile. 296 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch6g0588 641 SUPERFAMILY L domain-like 27 194 - -
Mch6g0588 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 641 - -
Mch6g0588 641 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524(InterPro)
Mch6g0588 641 SUPERFAMILY Protein kinase-like (PK-like) 275 566 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0588 Mch-Chr6:3988512 Mch8g0035 Mch-Chr8:204411 1.60E-199 dispersed
Mch6g0588 Mch-Chr6:3988512 Mch4g2400 Mch-Chr4:25103365 5.05E-225 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77468 PF07714 PK_Tyr_Ser-Thr 2.90E-42 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch6g0588 - - - 0.0